Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029I24.3 |
| Conread position: | 123-425 |
| Cow position: | chr9:19009019-19009319 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 210, 55 |
| Conread position: | 130-534 |
| Cow position: | chr9:60276956-60277358 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 130-541 |
| Cow position: | chr9:56540664-56540257 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 93 |
| Conread position: | 131-534 |
| Cow position: | chr9:17304915-17305320 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 260, 283 |
| Conread position: | 131-534 |
| Cow position: | chr9:28022867-28022461 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 135, 201 |
| Conread position: | 132-542 |
| Cow position: | chr9:28311346-28311752 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 133-357 |
| Cow position: | chr9:7040387-7040163 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 136-418 |
| Cow position: | chr9:52292456-52292183 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 255, 13 |
| Conread position: | 136-438 |
| Cow position: | chr9:39731000-39731299 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 136-456 |
| Cow position: | chr9:8165826-8166144 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 140, 16 |
| Conread position: | 136-489 |
| Cow position: | chr9:17543321-17542983 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 138-415 |
| Cow position: | chr9:10937649-10937370 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 138-415 |
| Cow position: | chr9:32970001-32969724 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 253, 47 |
| Conread position: | 138-418 |
| Cow position: | chr9:10322857-10322578 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 215, 131 |
| Conread position: | 138-418 |
| Cow position: | chr9:16176823-16176543 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 138-418 |
| Cow position: | chr9:22654630-22654346 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 138-418 |
| Cow position: | chr9:29027157-29027437 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 215, 131 |
| Conread position: | 138-418 |
| Cow position: | chr9:30673429-30673140 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 138-418 |
| Cow position: | chr9:51181123-51181411 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 138-425 |
| Cow position: | chr9:21410351-21410061 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 278 |
| Conread position: | 138-428 |
| Cow position: | chr9:6250353-6250063 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 253, 232 |
| Conread position: | 138-428 |
| Cow position: | chr9:27035737-27035445 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 138-428 |
| Cow position: | chr9:31808631-31808341 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 253, 220 |
| Conread position: | 138-438 |
| Cow position: | chr9:24980870-24981164 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 253, 86 |
| Conread position: | 138-440 |
| Cow position: | chr9:4533548-4533243 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 180 |
| Conread position: | 138-443 |
| Cow position: | chr9:33243275-33243592 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 171, 67 |
| Conread position: | 138-468 |
| Cow position: | chr9:59481742-59482067 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 253, 177 |
| Conread position: | 138-534 |
| Cow position: | chr9:28440863-28440465 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 138-534 |
| Cow position: | chr9:28679026-28678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 132, 277 |
| Conread position: | 138-534 |
| Cow position: | chr9:50791767-50791369 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 253, 276 |
| Conread position: | 139-453 |
| Cow position: | chr9:37161759-37162072 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 140-379 |
| Cow position: | chr9:23817021-23816783 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 140-434 |
| Cow position: | chr9:10608451-10608155 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 184, 90 |
| Conread position: | 145-531 |
| Cow position: | chr9:8848834-8849220 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 98, 164 |
| Conread position: | 145-541 |
| Cow position: | chr9:45151222-45150834 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 102 |
| Conread position: | 147-540 |
| Cow position: | chr9:28696498-28696112 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 56 |
| Conread position: | 148-317 |
| Cow position: | chr9:61264480-61264307 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 148-609 |
| Cow position: | chr9:50729094-50729546 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 87 |
| Conread position: | 149-334 |
| Cow position: | chr9:48808307-48808491 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 149-418 |
| Cow position: | chr9:7061037-7061308 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 149-534 |
| Cow position: | chr9:17063339-17063732 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 122, 271 |
| Conread position: | 149-534 |
| Cow position: | chr9:51211724-51211337 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 242, 265 |
| Conread position: | 149-534 |
| Cow position: | chr9:59537141-59536754 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 204, 266 |
| Conread position: | 152-390 |
| Cow position: | chr9:27783228-27782987 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 152-427 |
| Cow position: | chr9:47810198-47810475 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 207, 91 |
| Conread position: | 152-489 |
| Cow position: | chr9:22192324-22191990 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 210, 7 |
| Conread position: | 152-534 |
| Cow position: | chr9:4942767-4943154 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 185, 105 |
| Conread position: | 152-541 |
| Cow position: | chr9:12063030-12062652 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 157, 66 |
| Conread position: | 154-418 |
| Cow position: | chr9:13727206-13727465 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 159-418 |
| Cow position: | chr9:47740738-47740485 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 115 |
| Conread position: | 159-433 |
| Cow position: | chr9:54925587-54925311 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 257 |
| Conread position: | 159-644 |
| Cow position: | chr9:21110433-21109960 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 161 |
| Conread position: | 160-418 |
| Cow position: | chr9:9014130-9013868 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 178-390 |
| Cow position: | chr9:41974717-41974505 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 182-453 |
| Cow position: | chr9:16629658-16629928 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 209, 232 |
| Conread position: | 194-545 |
| Cow position: | chr9:37970197-37970550 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 223-710 |
| Cow position: | chr9:19410386-19410871 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 228-484 |
| Cow position: | chr9:62380894-62380642 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 237-539 |
| Cow position: | chr9:15797443-15797737 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 253, 99 |
Show alignments to all cow chromosomes.