Cow genome map

Conread name: Ss1.1-Pig4-TMW8029I24.3

Conread position: 70-392
Cow position: chrX:24555330-24555649 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 207
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 67, 24

Conread position: 71-425
Cow position: chrX:33707463-33707112 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 234
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 52, 91

Conread position: 72-302
Cow position: chrX:3626511-3626275 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 22

Conread position: 72-418
Cow position: chrX:6198079-6198427 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 234
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 86

Conread position: 72-477
Cow position: chrX:5854415-5854833 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 271
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 80

Conread position: 72-539
Cow position: chrX:8939737-8940207 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 310
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 120, 72

Conread position: 74-541
Cow position: chrX:27390156-27390626 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 305
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 94, 70

Conread position: 75-242
Cow position: chrX:31524207-31524042 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 27

Conread position: 90-418
Cow position: chrX:27316288-27315954 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 217
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 0

Conread position: 90-534
Cow position: chrX:23389506-23389954 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 289
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 42, 57

Conread position: 101-440
Cow position: chrX:18242164-18241837 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 226
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 71

Conread position: 115-541
Cow position: chrX:27603547-27603130 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 13

Conread position: 124-415
Cow position: chrX:21580443-21580148 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 192
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 49

Conread position: 130-456
Cow position: chrX:34346192-34345878 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 29

Conread position: 130-534
Cow position: chrX:17477456-17477862 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 253
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 261, 284

Conread position: 136-300
Cow position: chrX:10823843-10824000 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 136-416
Cow position: chrX:4411610-4411340 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 255, 84

Conread position: 136-418
Cow position: chrX:15118109-15118380 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 255, 15

Conread position: 136-436
Cow position: chrX:17525921-17526225 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 232

Conread position: 136-534
Cow position: chrX:983626-983225 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 257
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 23, 279

Conread position: 136-534
Cow position: chrX:3374946-3375342 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 247
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 262, 72

Conread position: 136-539
Cow position: chrX:18842009-18842404 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 43

Conread position: 136-541
Cow position: chrX:11117754-11118158 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 270
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 53, 194

Conread position: 136-541
Cow position: chrX:17613062-17613459 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 266
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 90, 96

Conread position: 136-595
Cow position: chrX:24523710-24523267 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 305
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 53, 73

Conread position: 137-307
Cow position: chrX:27006455-27006286 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 138-415
Cow position: chrX:21830490-21830211 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 180
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 125, 0

Conread position: 138-415
Cow position: chrX:26757654-26757932 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 253, 0

Conread position: 138-415
Cow position: chrX:38148556-38148273 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 181
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 132, 0

Conread position: 138-416
Cow position: chrX:10745193-10745469 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 181
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 253, 97

Conread position: 138-417
Cow position: chrX:23040163-23040442 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 253, 131

Conread position: 138-418
Cow position: chrX:11086328-11086609 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 183
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 100, 47

Conread position: 138-418
Cow position: chrX:29852608-29852885 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 131, 32

Conread position: 138-436
Cow position: chrX:26528935-26528637 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 253, 49

Conread position: 138-519
Cow position: chrX:29286394-29286008 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 245
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 95, 90

Conread position: 138-522
Cow position: chrX:13412173-13412557 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 240
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 253, 49

Conread position: 138-532
Cow position: chrX:8589122-8588729 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 256
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 139, 56

Conread position: 138-533
Cow position: chrX:17491011-17491399 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 253
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 246, 60

Conread position: 138-534
Cow position: chrX:979556-979158 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 254
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 253, 276

Conread position: 138-534
Cow position: chrX:2103145-2102748 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 247
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 254, 120

Conread position: 138-534
Cow position: chrX:2561899-2562295 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 252
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 253, 159

Conread position: 138-534
Cow position: chrX:5864354-5863957 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 249
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 253, 115

Conread position: 138-534
Cow position: chrX:9126321-9125923 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 259
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 215, 277

Conread position: 138-534
Cow position: chrX:11422831-11422434 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 247
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 253, 202

Conread position: 138-534
Cow position: chrX:12343896-12343505 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 245
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 253, 276

Conread position: 138-534
Cow position: chrX:12653563-12653963 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 254
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 128, 278

Conread position: 138-534
Cow position: chrX:12702743-12703141 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 250
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 253, 276

Conread position: 138-534
Cow position: chrX:13075736-13076135 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 255
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 231, 277

Conread position: 138-534
Cow position: chrX:15979998-15980394 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 250
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 138, 115

Conread position: 138-534
Cow position: chrX:16362162-16362561 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 248
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 132, 111

Conread position: 138-534
Cow position: chrX:27425365-27425757 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 247
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 249, 287

Conread position: 138-537
Cow position: chrX:8480611-8480210 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 251
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 131, 119

Conread position: 139-327
Cow position: chrX:6641368-6641557 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 106

Conread position: 139-331
Cow position: chrX:27593362-27593553 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 139-380
Cow position: chrX:40021671-40021920 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 53

Conread position: 139-428
Cow position: chrX:34245830-34246115 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 252, 42

Conread position: 139-479
Cow position: chrX:41102507-41102845 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 221
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 28, 40

Conread position: 139-483
Cow position: chrX:12314793-12315140 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 217
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 13

Conread position: 139-537
Cow position: chrX:18553389-18552989 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 252, 275

Conread position: 139-541
Cow position: chrX:21731801-21732206 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 265
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 191

Conread position: 139-542
Cow position: chrX:21971778-21971389 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 272
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 346, 192

Conread position: 139-556
Cow position: chrX:23455058-23455474 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 266
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 252, 91

Conread position: 140-489
Cow position: chrX:27641548-27641210 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 170, 38

Conread position: 147-488
Cow position: chrX:30170878-30171221 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 219
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 188

Conread position: 148-540
Cow position: chrX:11492654-11492262 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 99, 51

Conread position: 149-409
Cow position: chrX:21275962-21276222 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 243, 56

Conread position: 149-418
Cow position: chrX:23277976-23277706 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 19

Conread position: 149-418
Cow position: chrX:30231145-30231417 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 149-527
Cow position: chrX:14460473-14460093 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 236
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 242, 264

Conread position: 149-532
Cow position: chrX:5394056-5394445 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 239
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 121, 269

Conread position: 149-534
Cow position: chrX:7482581-7482195 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 244
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 204, 29

Conread position: 149-534
Cow position: chrX:8962624-8963013 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 248
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 127, 198

Conread position: 149-534
Cow position: chrX:24324624-24325018 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 241
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 190, 272

Conread position: 149-534
Cow position: chrX:28585929-28585542 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 247
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 116, 127

Conread position: 149-537
Cow position: chrX:29910480-29910865 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 243
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 242, 87

Conread position: 152-418
Cow position: chrX:1547925-1547653 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 177
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 152-428
Cow position: chrX:2481685-2481961 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 176
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 239, 72

Conread position: 152-471
Cow position: chrX:4752680-4752991 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 239, 109

Conread position: 152-534
Cow position: chrX:22489090-22488708 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 246
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 35, 109

Conread position: 152-534
Cow position: chrX:23385564-23385950 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 7

Conread position: 152-539
Cow position: chrX:23020270-23019887 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 247
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 62, 69

Conread position: 152-728
Cow position: chrX:30011945-30011369 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 349
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 239, 262

Conread position: 153-519
Cow position: chrX:28650608-28650969 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 237
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 166, 34

Conread position: 154-440
Cow position: chrX:15863295-15863578 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 229, 36

Conread position: 154-442
Cow position: chrX:38890937-38890647 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 179, 98

Conread position: 160-484
Cow position: chrX:498333-498013 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 232, 102

Conread position: 161-516
Cow position: chrX:1447037-1447389 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 236
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 33

Conread position: 170-539
Cow position: chrX:17727518-17727156 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 242
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 213, 52

Conread position: 175-543
Cow position: chrX:5296622-5296994 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 239
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 96, 5

Conread position: 181-534
Cow position: chrX:13096354-13096709 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 225
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 210, 233

Conread position: 181-534
Cow position: chrX:31494338-31493981 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 232
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 106, 235

Conread position: 194-488
Cow position: chrX:22618393-22618687 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 156, 233

Conread position: 194-532
Cow position: chrX:3084221-3084561 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 197, 229

Conread position: 194-534
Cow position: chrX:15178520-15178862 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 214
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 197, 232

Conread position: 194-534
Cow position: chrX:35530769-35530425 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 219
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 222

Conread position: 199-539
Cow position: chrX:19468917-19468583 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 214
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 154, 20

Conread position: 200-479
Cow position: chrX:26578568-26578294 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 123, 36

Conread position: 221-594
Cow position: chrX:2766216-2765852 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 242
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 19, 15

Conread position: 233-726
Cow position: chrX:20506404-20505892 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 333
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 29, 52

Show alignments to all cow chromosomes.