Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 2-144 |
| Cow position: | chr11:36713159-36713017 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 2-248 |
| Cow position: | chr11:19102525-19102278 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 2-248 |
| Cow position: | chr11:30187816-30188064 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 61 |
| Conread position: | 3-184 |
| Cow position: | chr11:28063803-28063985 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 142, 161 |
| Conread position: | 4-248 |
| Cow position: | chr11:53432103-53431858 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 5-132 |
| Cow position: | chr11:13066722-13066594 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 5-197 |
| Cow position: | chr11:8283425-8283629 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-245 |
| Cow position: | chr11:44251763-44251997 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr11:4270897-4270653 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr11:10090640-10090883 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 140, 166 |
| Conread position: | 5-248 |
| Cow position: | chr11:10847406-10847650 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr11:11988071-11988315 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr11:23877266-23877511 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-248 |
| Cow position: | chr11:28049234-28049002 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 134, 50 |
| Conread position: | 5-248 |
| Cow position: | chr11:38835467-38835223 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr11:41170728-41170485 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr11:44157289-44157045 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr11:85393847-85393604 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 6-164 |
| Cow position: | chr11:39802405-39802566 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 7-244 |
| Cow position: | chr11:30205898-30206128 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 7-248 |
| Cow position: | chr11:12358457-12358216 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 44 |
| Conread position: | 7-248 |
| Cow position: | chr11:26124963-26124721 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 8-248 |
| Cow position: | chr11:11677320-11677551 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 11-226 |
| Cow position: | chr11:3492976-3493188 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 11-245 |
| Cow position: | chr11:61401086-61400853 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-247 |
| Cow position: | chr11:67450463-67450698 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr11:19064284-19064048 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr11:28229792-28229556 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-248 |
| Cow position: | chr11:33194588-33194353 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr11:38505640-38505405 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr11:57628081-57627846 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr11:64045963-64046199 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr11:67846606-67846370 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr11:73477273-73477509 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-249 |
| Cow position: | chr11:5343252-5343015 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 11-249 |
| Cow position: | chr11:36744215-36743979 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-250 |
| Cow position: | chr11:15983589-15983828 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 11-255 |
| Cow position: | chr11:9606613-9606370 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 13-243 |
| Cow position: | chr11:15898972-15898746 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 13-243 |
| Cow position: | chr11:84389598-84389830 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 14-248 |
| Cow position: | chr11:18073055-18072812 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 205 |
| Conread position: | 14-248 |
| Cow position: | chr11:24393291-24393528 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 18-228 |
| Cow position: | chr11:46246589-46246379 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 18-248 |
| Cow position: | chr11:4027585-4027359 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr11:9157176-9156952 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 18-248 |
| Cow position: | chr11:58134365-58134595 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 19-248 |
| Cow position: | chr11:20510101-20510329 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 22-168 |
| Cow position: | chr11:10051297-10051444 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 73 |
| Conread position: | 31-248 |
| Cow position: | chr11:31874785-31874568 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 32-246 |
| Cow position: | chr11:52419372-52419596 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 46-249 |
| Cow position: | chr11:32271316-32271111 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 113 |
| Conread position: | 47-248 |
| Cow position: | chr11:4041089-4040888 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 82 |
| Conread position: | 47-248 |
| Cow position: | chr11:17107687-17107486 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 165 |
| Conread position: | 47-248 |
| Cow position: | chr11:28108149-28108351 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 98, 124 |
| Conread position: | 47-249 |
| Cow position: | chr11:9734664-9734459 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 48-245 |
| Cow position: | chr11:8245315-8245513 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 48-248 |
| Cow position: | chr11:43514629-43514429 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 97, 189 |
| Conread position: | 60-248 |
| Cow position: | chr11:1496067-1495884 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 60-248 |
| Cow position: | chr11:31926190-31926375 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 69-249 |
| Cow position: | chr11:43733754-43733935 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 75-248 |
| Cow position: | chr11:20734215-20734041 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 75-248 |
| Cow position: | chr11:45111650-45111824 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 75-248 |
| Cow position: | chr11:64082056-64081882 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 81-245 |
| Cow position: | chr11:40775961-40775798 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 87-248 |
| Cow position: | chr11:63655298-63655136 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 88-248 |
| Cow position: | chr11:47760650-47760489 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 85 |
| Conread position: | 94-239 |
| Cow position: | chr11:36762809-36762955 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 125-248 |
| Cow position: | chr11:10217243-10217120 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 534-728 |
| Cow position: | chr11:63640867-63640669 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 546-712 |
| Cow position: | chr11:72292573-72292732 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 548-724 |
| Cow position: | chr11:31326029-31326203 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 548-728 |
| Cow position: | chr11:69421690-69421518 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 548-729 |
| Cow position: | chr11:3283046-3283229 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 548-729 |
| Cow position: | chr11:11483334-11483509 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 549-730 |
| Cow position: | chr11:61454493-61454315 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 551-712 |
| Cow position: | chr11:19606603-19606765 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 554-713 |
| Cow position: | chr11:29699671-29699515 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.