Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 1-245 |
| Cow position: | chr13:35757271-35757512 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 2-248 |
| Cow position: | chr13:26844121-26844359 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 5-248 |
| Cow position: | chr13:4941118-4941355 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr13:9044530-9044774 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr13:30238276-30238518 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 5-248 |
| Cow position: | chr13:34042339-34042095 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr13:34937521-34937759 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 5-249 |
| Cow position: | chr13:15924354-15924109 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-249 |
| Cow position: | chr13:20542009-20541761 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 6-246 |
| Cow position: | chr13:34048658-34048894 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 6-248 |
| Cow position: | chr13:3654292-3654047 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 6-248 |
| Cow position: | chr13:27922198-27921961 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 6-248 |
| Cow position: | chr13:31556685-31556450 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 7-243 |
| Cow position: | chr13:60700817-60700590 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 7-245 |
| Cow position: | chr13:23003275-23003038 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 7-246 |
| Cow position: | chr13:21131969-21132210 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 15 |
| Conread position: | 7-248 |
| Cow position: | chr13:22766057-22766298 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 8-248 |
| Cow position: | chr13:34868776-34869014 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 11-245 |
| Cow position: | chr13:60466368-60466600 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 11-248 |
| Cow position: | chr13:2388787-2388551 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr13:3058079-3057843 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr13:13324780-13325016 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr13:30244647-30244411 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr13:31734054-31733818 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 11-249 |
| Cow position: | chr13:17308506-17308738 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-249 |
| Cow position: | chr13:21840163-21839930 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 11-249 |
| Cow position: | chr13:49973715-49973952 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 13-246 |
| Cow position: | chr13:2296783-2296552 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 13-255 |
| Cow position: | chr13:22831654-22831410 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 14-244 |
| Cow position: | chr13:29202321-29202086 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 14-245 |
| Cow position: | chr13:43983041-43982813 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 14-248 |
| Cow position: | chr13:33336379-33336154 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 14-256 |
| Cow position: | chr13:22185197-22184957 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 18-248 |
| Cow position: | chr13:1593113-1592883 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 18-248 |
| Cow position: | chr13:4483838-4484069 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 18-248 |
| Cow position: | chr13:30303320-30303549 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr13:32737778-32737554 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 20-248 |
| Cow position: | chr13:6668077-6667846 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 23-184 |
| Cow position: | chr13:30262403-30262566 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 37-246 |
| Cow position: | chr13:11064106-11063908 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 133, 96 |
| Conread position: | 37-248 |
| Cow position: | chr13:32985290-32985079 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 108, 10 |
| Conread position: | 39-248 |
| Cow position: | chr13:50109518-50109727 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 47-249 |
| Cow position: | chr13:47229936-47229733 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 59-161 |
| Cow position: | chr13:34766789-34766686 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 61-244 |
| Cow position: | chr13:34325478-34325292 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 61-248 |
| Cow position: | chr13:34029167-34029353 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 72-248 |
| Cow position: | chr13:35030642-35030811 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 75-248 |
| Cow position: | chr13:30656880-30656708 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 75-248 |
| Cow position: | chr13:41315952-41316126 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 76-248 |
| Cow position: | chr13:31612208-31612034 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 80-249 |
| Cow position: | chr13:58118809-58118640 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 83-248 |
| Cow position: | chr13:32545484-32545650 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 85-248 |
| Cow position: | chr13:15451001-15450841 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 86-246 |
| Cow position: | chr13:57023812-57023974 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 86-248 |
| Cow position: | chr13:34911053-34910892 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 89-249 |
| Cow position: | chr13:676970-677131 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 416-555 |
| Cow position: | chr13:15199589-15199447 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 545-730 |
| Cow position: | chr13:17619560-17619374 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 548-713 |
| Cow position: | chr13:37803836-37803677 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 548-723 |
| Cow position: | chr13:18696785-18696611 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 548-724 |
| Cow position: | chr13:45023264-45023436 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 548-728 |
| Cow position: | chr13:37621412-37621592 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-728 |
| Cow position: | chr13:47644009-47643832 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 548-730 |
| Cow position: | chr13:43525290-43525467 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 548-730 |
| Cow position: | chr13:55316246-55316443 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 552-727 |
| Cow position: | chr13:9265886-9266064 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 560-729 |
| Cow position: | chr13:52199060-52198887 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 139 |
| Conread position: | 625-732 |
| Cow position: | chr13:372526-372633 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.