Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 2-245 |
| Cow position: | chr14:46513444-46513684 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 3-248 |
| Cow position: | chr14:33487849-33488100 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 142, 22 |
| Conread position: | 4-248 |
| Cow position: | chr14:44287345-44287101 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 5-216 |
| Cow position: | chr14:28993948-28993736 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-245 |
| Cow position: | chr14:12743162-12742925 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-247 |
| Cow position: | chr14:46529133-46529372 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 5-248 |
| Cow position: | chr14:7472274-7472509 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-248 |
| Cow position: | chr14:9515917-9515656 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 242 |
| Conread position: | 5-248 |
| Cow position: | chr14:11154260-11154016 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr14:13778861-13779102 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 5-248 |
| Cow position: | chr14:17001153-17000913 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 5-248 |
| Cow position: | chr14:17685302-17685546 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr14:33342041-33342282 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 140, 38 |
| Conread position: | 5-248 |
| Cow position: | chr14:37223807-37224049 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr14:37413536-37413293 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 127 |
| Conread position: | 5-248 |
| Cow position: | chr14:41408789-41409034 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 5-248 |
| Cow position: | chr14:45161003-45161247 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr14:48254399-48254153 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-249 |
| Cow position: | chr14:47923019-47923258 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 140, 82 |
| Conread position: | 6-236 |
| Cow position: | chr14:16919782-16919554 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 139, 45 |
| Conread position: | 6-239 |
| Cow position: | chr14:44581272-44581503 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 82, 133 |
| Conread position: | 6-244 |
| Cow position: | chr14:44377718-44377946 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 6-244 |
| Cow position: | chr14:47655063-47655298 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 139, 76 |
| Conread position: | 6-245 |
| Cow position: | chr14:22031514-22031275 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 6-248 |
| Cow position: | chr14:17760994-17760750 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 7-214 |
| Cow position: | chr14:13323963-13323757 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 138, 95 |
| Conread position: | 7-248 |
| Cow position: | chr14:16273389-16273153 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 7-248 |
| Cow position: | chr14:45303043-45302808 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 8-245 |
| Cow position: | chr14:35386903-35386667 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 137, 29 |
| Conread position: | 8-245 |
| Cow position: | chr14:37457497-37457261 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 8-248 |
| Cow position: | chr14:38815899-38815656 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 137, 61 |
| Conread position: | 8-248 |
| Cow position: | chr14:44776141-44775903 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 137, 63 |
| Conread position: | 9-247 |
| Cow position: | chr14:21743874-21744112 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 9-248 |
| Cow position: | chr14:33236948-33237186 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 27, 184 |
| Conread position: | 9-249 |
| Cow position: | chr14:45712081-45711838 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 134, 89 |
| Conread position: | 11-194 |
| Cow position: | chr14:23900893-23900711 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-242 |
| Cow position: | chr14:48970595-48970822 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 11-248 |
| Cow position: | chr14:2284246-2284481 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr14:23257266-23257502 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-248 |
| Cow position: | chr14:45672138-45671904 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 11-249 |
| Cow position: | chr14:750477-750727 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-249 |
| Cow position: | chr14:29047996-29047759 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-250 |
| Cow position: | chr14:17491549-17491311 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 14-245 |
| Cow position: | chr14:19328352-19328123 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 14-248 |
| Cow position: | chr14:5528978-5529211 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 14-248 |
| Cow position: | chr14:30706372-30706136 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 15-245 |
| Cow position: | chr14:40773889-40774129 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 15-248 |
| Cow position: | chr14:30596468-30596235 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 130, 222 |
| Conread position: | 15-248 |
| Cow position: | chr14:50110482-50110717 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 18-245 |
| Cow position: | chr14:13621222-13620998 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 18-248 |
| Cow position: | chr14:5511742-5511972 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 20-248 |
| Cow position: | chr14:13864163-13863938 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 20-248 |
| Cow position: | chr14:45080964-45081193 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 22-248 |
| Cow position: | chr14:44685964-44686193 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 22-248 |
| Cow position: | chr14:45834070-45834294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 24-248 |
| Cow position: | chr14:13302947-13303172 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 32-248 |
| Cow position: | chr14:9045492-9045710 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 32-248 |
| Cow position: | chr14:20782390-20782606 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 47-248 |
| Cow position: | chr14:33393838-33393635 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 77 |
| Conread position: | 47-249 |
| Cow position: | chr14:30585011-30584809 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 48-242 |
| Cow position: | chr14:46474787-46474981 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 53-248 |
| Cow position: | chr14:34860636-34860833 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 59-248 |
| Cow position: | chr14:44257020-44256822 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 193 |
| Conread position: | 60-248 |
| Cow position: | chr14:45029170-45028981 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 66-248 |
| Cow position: | chr14:30735299-30735118 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 72-248 |
| Cow position: | chr14:45206283-45206459 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 170 |
| Conread position: | 74-244 |
| Cow position: | chr14:43557946-43558115 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 74-248 |
| Cow position: | chr14:45917616-45917792 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 75-248 |
| Cow position: | chr14:38531763-38531589 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 81-248 |
| Cow position: | chr14:40738494-40738658 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 81-248 |
| Cow position: | chr14:48825275-48825443 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 82-248 |
| Cow position: | chr14:50138575-50138741 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 86-248 |
| Cow position: | chr14:29777517-29777354 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 102-248 |
| Cow position: | chr14:34043659-34043516 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 399-551 |
| Cow position: | chr14:1658958-1659115 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 548-724 |
| Cow position: | chr14:33758371-33758189 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 548-730 |
| Cow position: | chr14:18301963-18301792 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 551-725 |
| Cow position: | chr14:10078267-10078095 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 552-730 |
| Cow position: | chr14:48762387-48762205 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.