Cow genome map

Conread name: Ss1.1-Pig4-TMW8029M14.5

Conread position: 1-249
Cow position: chr15:40105769-40106011 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 136

Conread position: 2-245
Cow position: chr15:9912542-9912780 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 2-247
Cow position: chr15:35753694-35753448 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 241

Conread position: 2-248
Cow position: chr15:7549300-7549549 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 150

Conread position: 2-249
Cow position: chr15:20356990-20356747 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 27

Conread position: 5-223
Cow position: chr15:36642840-36643059 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 134

Conread position: 5-243
Cow position: chr15:2802265-2802023 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 12

Conread position: 5-243
Cow position: chr15:42936621-42936854 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 47

Conread position: 5-244
Cow position: chr15:8099395-8099625 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 14, 23

Conread position: 5-244
Cow position: chr15:18332921-18332682 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 23

Conread position: 5-245
Cow position: chr15:6156046-6155801 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 24

Conread position: 5-248
Cow position: chr15:4922058-4922301 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 23

Conread position: 5-248
Cow position: chr15:15347212-15346969 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 14, 47

Conread position: 5-248
Cow position: chr15:19738146-19737902 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 47

Conread position: 5-248
Cow position: chr15:21665839-21665595 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 14, 47

Conread position: 5-248
Cow position: chr15:31358793-31359037 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 14, 47

Conread position: 5-248
Cow position: chr15:32494479-32494236 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 25

Conread position: 5-248
Cow position: chr15:35735485-35735721 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 140, 86

Conread position: 5-248
Cow position: chr15:51216496-51216739 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 23

Conread position: 6-243
Cow position: chr15:4961553-4961785 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 15, 128

Conread position: 6-246
Cow position: chr15:498662-498905 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 58, 120

Conread position: 6-246
Cow position: chr15:7966057-7965819 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 139, 53

Conread position: 6-248
Cow position: chr15:2076556-2076798 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 46

Conread position: 6-248
Cow position: chr15:6623002-6623240 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 146, 133

Conread position: 6-248
Cow position: chr15:9429851-9430089 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 132, 19

Conread position: 6-248
Cow position: chr15:18576622-18576864 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 13, 46

Conread position: 6-248
Cow position: chr15:21950211-21949968 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 35

Conread position: 7-248
Cow position: chr15:7787794-7787557 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 130, 33

Conread position: 7-248
Cow position: chr15:29009744-29009984 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 138, 21

Conread position: 7-248
Cow position: chr15:53338935-53339167 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 8-242
Cow position: chr15:30810896-30811141 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 71, 30

Conread position: 8-248
Cow position: chr15:24295009-24295245 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 137, 18

Conread position: 11-248
Cow position: chr15:444517-444751 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 39, 28

Conread position: 11-248
Cow position: chr15:1519241-1519005 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 135, 17

Conread position: 11-248
Cow position: chr15:1834552-1834323 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 134, 15

Conread position: 11-248
Cow position: chr15:1882597-1882361 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 134, 17

Conread position: 11-248
Cow position: chr15:2647747-2647510 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 106, 17

Conread position: 11-248
Cow position: chr15:6472008-6471774 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 129, 20

Conread position: 11-248
Cow position: chr15:7894323-7894087 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 137

Conread position: 11-248
Cow position: chr15:28490232-28489998 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 31, 15

Conread position: 11-248
Cow position: chr15:36077156-36077392 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 135, 17

Conread position: 11-248
Cow position: chr15:42320512-42320277 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 134, 17

Conread position: 11-249
Cow position: chr15:4196372-4196608 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 33, 17

Conread position: 11-249
Cow position: chr15:18268078-18267841 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 134, 15

Conread position: 11-263
Cow position: chr15:2011990-2012240 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 131, 36

Conread position: 13-248
Cow position: chr15:4142908-4142673 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 132, 19

Conread position: 14-244
Cow position: chr15:2413657-2413421 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 13

Conread position: 14-244
Cow position: chr15:44069840-44070069 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 38

Conread position: 14-246
Cow position: chr15:32507726-32507488 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 11

Conread position: 14-248
Cow position: chr15:17292355-17292593 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 131, 13

Conread position: 16-239
Cow position: chr15:7260547-7260771 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 66, 31

Conread position: 16-247
Cow position: chr15:51714874-51715107 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 41, 144

Conread position: 18-241
Cow position: chr15:8750347-8750566 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 148, 9

Conread position: 18-245
Cow position: chr15:315938-315713 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 125, 9

Conread position: 18-248
Cow position: chr15:4385189-4385414 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 127, 14

Conread position: 18-248
Cow position: chr15:12421247-12421014 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 16, 11

Conread position: 18-248
Cow position: chr15:37392413-37392640 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 127, 9

Conread position: 20-255
Cow position: chr15:44828715-44828951 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 9, 232

Conread position: 32-248
Cow position: chr15:1772426-1772643 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 114, 0

Conread position: 32-248
Cow position: chr15:17080274-17080057 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 111, 0

Conread position: 32-248
Cow position: chr15:17218470-17218254 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 113, 104

Conread position: 32-248
Cow position: chr15:50147006-50147212 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 113, 127

Conread position: 34-246
Cow position: chr15:50124012-50123799 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 111, 0

Conread position: 47-248
Cow position: chr15:3009908-3009707 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 99, 124

Conread position: 47-248
Cow position: chr15:36970867-36971066 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 120

Conread position: 47-258
Cow position: chr15:41366120-41366331 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 96, 63

Conread position: 48-249
Cow position: chr15:36626345-36626134 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 95, 169

Conread position: 59-248
Cow position: chr15:524900-524710 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 87, 105

Conread position: 59-248
Cow position: chr15:4671391-4671583 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 59-248
Cow position: chr15:7837205-7837395 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 87, 0

Conread position: 59-255
Cow position: chr15:4765166-4765362 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 135

Conread position: 60-248
Cow position: chr15:7544843-7545028 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 85, 127

Conread position: 61-249
Cow position: chr15:3888835-3889022 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 85, 23

Conread position: 66-248
Cow position: chr15:35647699-35647516 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 80, 0

Conread position: 67-248
Cow position: chr15:32720774-32720590 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 69-245
Cow position: chr15:53577368-53577193 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 76

Conread position: 75-248
Cow position: chr15:5980333-5980509 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 76-244
Cow position: chr15:7234277-7234444 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 76-248
Cow position: chr15:10888593-10888762 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 77-248
Cow position: chr15:3261355-3261183 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 78-242
Cow position: chr15:4812582-4812747 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 81-255
Cow position: chr15:14582368-14582199 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 548-723
Cow position: chr15:10335804-10335624 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 11

Conread position: 548-727
Cow position: chr15:42789099-42789286 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 548-728
Cow position: chr15:2141254-2141437 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 68, 47

Conread position: 548-730
Cow position: chr15:30470923-30471096 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 173, 71

Conread position: 551-712
Cow position: chr15:36713966-36714129 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 552-727
Cow position: chr15:47058791-47058611 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 38

Show alignments to all cow chromosomes.