Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 1-245 |
| Cow position: | chr16:40296622-40296377 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 1-248 |
| Cow position: | chr16:28437837-28437582 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 116, 46 |
| Conread position: | 2-248 |
| Cow position: | chr16:18764066-18763822 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 5-244 |
| Cow position: | chr16:42739533-42739307 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 5-245 |
| Cow position: | chr16:25156318-25156077 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 5-245 |
| Cow position: | chr16:26663309-26663552 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-245 |
| Cow position: | chr16:43897711-43897471 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr16:407471-407228 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr16:1567894-1567650 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr16:2727728-2727484 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr16:5483883-5484123 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 5-248 |
| Cow position: | chr16:8816544-8816302 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 5-248 |
| Cow position: | chr16:9930496-9930739 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 138, 22 |
| Conread position: | 5-248 |
| Cow position: | chr16:10203870-10203635 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-248 |
| Cow position: | chr16:10437801-10438045 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr16:12538365-12538122 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 5-248 |
| Cow position: | chr16:15566302-15566544 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 5-248 |
| Cow position: | chr16:25085203-25085431 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 5-248 |
| Cow position: | chr16:25257496-25257739 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 132, 159 |
| Conread position: | 5-248 |
| Cow position: | chr16:25441184-25441430 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr16:25457905-25457661 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr16:28471542-28471299 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr16:29033612-29033845 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 5-248 |
| Cow position: | chr16:29046582-29046825 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 7-232 |
| Cow position: | chr16:25341529-25341754 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 7-248 |
| Cow position: | chr16:34529885-34530125 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 8-171 |
| Cow position: | chr16:41756752-41756592 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 137, 44 |
| Conread position: | 8-248 |
| Cow position: | chr16:15184367-15184599 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 137, 43 |
| Conread position: | 11-222 |
| Cow position: | chr16:10376017-10375807 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-248 |
| Cow position: | chr16:5661411-5661646 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-248 |
| Cow position: | chr16:31832193-31832429 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr16:53045915-53046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-249 |
| Cow position: | chr16:28170802-28170568 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 12-248 |
| Cow position: | chr16:4302769-4302537 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 13-248 |
| Cow position: | chr16:42186089-42185857 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 132, 99 |
| Conread position: | 14-248 |
| Cow position: | chr16:23252937-23252703 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 193 |
| Conread position: | 18-245 |
| Cow position: | chr16:2411395-2411167 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 18-248 |
| Cow position: | chr16:2483568-2483337 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 19-248 |
| Cow position: | chr16:23982885-23983112 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 22-232 |
| Cow position: | chr16:18687551-18687341 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 60-248 |
| Cow position: | chr16:25170967-25171155 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 60-248 |
| Cow position: | chr16:25188244-25188433 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-248 |
| Cow position: | chr16:41163451-41163262 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-255 |
| Cow position: | chr16:2239125-2238932 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 66-248 |
| Cow position: | chr16:24105325-24105507 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 68-245 |
| Cow position: | chr16:14666190-14666012 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 68-248 |
| Cow position: | chr16:836668-836850 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 73-248 |
| Cow position: | chr16:25892346-25892520 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 74-248 |
| Cow position: | chr16:31592285-31592110 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 75-248 |
| Cow position: | chr16:32362-32536 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 86-248 |
| Cow position: | chr16:18498677-18498516 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 117 |
| Conread position: | 92-248 |
| Cow position: | chr16:15492875-15493032 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 548-711 |
| Cow position: | chr16:17945562-17945728 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-712 |
| Cow position: | chr16:51915611-51915779 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 552-728 |
| Cow position: | chr16:12091618-12091446 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 552-730 |
| Cow position: | chr16:11422345-11422522 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 169, 106 |
| Conread position: | 552-730 |
| Cow position: | chr16:19003488-19003306 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.