Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 2-245 |
| Cow position: | chr18:29765311-29765559 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-248 |
| Cow position: | chr18:46868216-46867975 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 5-245 |
| Cow position: | chr18:37505409-37505647 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 5-247 |
| Cow position: | chr18:14416321-14416566 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-248 |
| Cow position: | chr18:14130735-14130980 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 5-248 |
| Cow position: | chr18:23797993-23798235 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 5-248 |
| Cow position: | chr18:36508678-36508923 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr18:52651265-52651507 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 6-241 |
| Cow position: | chr18:33750361-33750594 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 7-245 |
| Cow position: | chr18:54003870-54004096 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 7-248 |
| Cow position: | chr18:25351097-25351338 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 7-248 |
| Cow position: | chr18:27987413-27987653 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 7-248 |
| Cow position: | chr18:54171189-54170949 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 8-248 |
| Cow position: | chr18:8169054-8169291 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 137, 47 |
| Conread position: | 10-248 |
| Cow position: | chr18:51481186-51481423 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 11-248 |
| Cow position: | chr18:11274759-11274523 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr18:19352729-19352954 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 11-248 |
| Cow position: | chr18:22602834-22603068 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr18:24040385-24040142 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr18:51342033-51342269 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr18:51462732-51462497 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 13-248 |
| Cow position: | chr18:55088575-55088337 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 14-197 |
| Cow position: | chr18:54023769-54023587 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 13 |
| Conread position: | 14-248 |
| Cow position: | chr18:40478738-40478972 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 18-245 |
| Cow position: | chr18:27837957-27837730 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 18-248 |
| Cow position: | chr18:28973543-28973300 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 18-248 |
| Cow position: | chr18:32652562-32652790 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 18-248 |
| Cow position: | chr18:33336222-33336454 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 80, 9 |
| Conread position: | 18-248 |
| Cow position: | chr18:41840465-41840235 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 20-249 |
| Cow position: | chr18:33269184-33269414 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 121 |
| Conread position: | 47-249 |
| Cow position: | chr18:33953194-33952993 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 122 |
| Conread position: | 59-248 |
| Cow position: | chr18:16088545-16088735 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 86, 105 |
| Conread position: | 59-248 |
| Cow position: | chr18:16176219-16176028 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 86, 180 |
| Conread position: | 60-242 |
| Cow position: | chr18:51660741-51660924 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 65-248 |
| Cow position: | chr18:54270913-54271095 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 140 |
| Conread position: | 81-242 |
| Cow position: | chr18:32260095-32259932 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 548-727 |
| Cow position: | chr18:11672050-11672222 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 551-725 |
| Cow position: | chr18:12270511-12270680 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 551-730 |
| Cow position: | chr18:39875249-39875072 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 164, 30 |
| Conread position: | 552-728 |
| Cow position: | chr18:1954578-1954409 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 169, 93 |
| Conread position: | 603-723 |
| Cow position: | chr18:40356900-40356779 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.