Cow genome map

Conread name: Ss1.1-Pig4-TMW8029M14.5

Conread position: 2-242
Cow position: chr2:29029925-29030168 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 52

Conread position: 2-248
Cow position: chr2:45968164-45967917 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 58

Conread position: 5-197
Cow position: chr2:1362951-1363144 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 152

Conread position: 5-248
Cow position: chr2:5963290-5963046 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 140, 0

Conread position: 5-248
Cow position: chr2:8118328-8118572 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 14, 40

Conread position: 5-248
Cow position: chr2:11159335-11159091 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 14, 47

Conread position: 5-248
Cow position: chr2:12224522-12224278 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 17, 47

Conread position: 5-248
Cow position: chr2:28650439-28650198 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 14, 25

Conread position: 5-248
Cow position: chr2:28793043-28793288 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 48

Conread position: 5-248
Cow position: chr2:36053199-36052965 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 141, 22

Conread position: 5-248
Cow position: chr2:50983437-50983194 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 14, 47

Conread position: 5-248
Cow position: chr2:53329547-53329790 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 128, 22

Conread position: 5-248
Cow position: chr2:65938658-65938416 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 23

Conread position: 6-244
Cow position: chr2:36980168-36980407 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 46

Conread position: 6-248
Cow position: chr2:13045913-13045670 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 46

Conread position: 6-248
Cow position: chr2:42333056-42332833 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 6-248
Cow position: chr2:52062461-52062701 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 139, 45

Conread position: 6-249
Cow position: chr2:35355487-35355733 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 26, 78

Conread position: 6-258
Cow position: chr2:45919771-45919521 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 23

Conread position: 7-248
Cow position: chr2:16900045-16900285 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 138, 12

Conread position: 7-248
Cow position: chr2:50077392-50077633 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 78, 45

Conread position: 8-237
Cow position: chr2:44497665-44497436 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 25, 56

Conread position: 8-246
Cow position: chr2:63978104-63978340 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 27

Conread position: 8-248
Cow position: chr2:5485181-5484939 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 69, 20

Conread position: 8-248
Cow position: chr2:10186437-10186200 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 0

Conread position: 8-248
Cow position: chr2:69584833-69584591 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 20

Conread position: 8-249
Cow position: chr2:198994-198755 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 137, 19

Conread position: 9-244
Cow position: chr2:20873993-20873763 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 136, 28

Conread position: 11-179
Cow position: chr2:51990737-51990571 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 134, 17

Conread position: 11-244
Cow position: chr2:49472040-49472272 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 134, 17

Conread position: 11-247
Cow position: chr2:2413003-2412768 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 134, 17

Conread position: 11-248
Cow position: chr2:212428-212193 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 37, 26

Conread position: 11-248
Cow position: chr2:2088380-2088144 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 132, 26

Conread position: 11-248
Cow position: chr2:5474309-5474545 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 134, 17

Conread position: 11-248
Cow position: chr2:39421372-39421606 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 134, 15

Conread position: 11-248
Cow position: chr2:39622418-39622646 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 134, 175

Conread position: 11-248
Cow position: chr2:47038621-47038385 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 135, 15

Conread position: 11-248
Cow position: chr2:51990455-51990220 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 135, 17

Conread position: 11-248
Cow position: chr2:57588489-57588725 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 135, 15

Conread position: 11-248
Cow position: chr2:80955843-80955607 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 134, 17

Conread position: 11-249
Cow position: chr2:3324771-3324530 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 134, 17

Conread position: 11-249
Cow position: chr2:9907706-9907943 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 134, 17

Conread position: 11-249
Cow position: chr2:25030683-25030450 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 134, 15

Conread position: 11-249
Cow position: chr2:44091094-44091331 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 135, 15

Conread position: 11-249
Cow position: chr2:57334989-57335226 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 135, 15

Conread position: 11-250
Cow position: chr2:2380900-2381138 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 15

Conread position: 12-248
Cow position: chr2:10611832-10611602 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 133, 14

Conread position: 14-239
Cow position: chr2:3502430-3502202 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 55, 132

Conread position: 14-248
Cow position: chr2:10268858-10268624 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 131, 30

Conread position: 16-248
Cow position: chr2:7902823-7903050 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 127, 60

Conread position: 18-248
Cow position: chr2:282886-282657 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 125, 33

Conread position: 18-248
Cow position: chr2:5905061-5904828 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 18-248
Cow position: chr2:81256611-81256842 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 128, 9

Conread position: 18-249
Cow position: chr2:24146665-24146895 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 125, 9

Conread position: 19-248
Cow position: chr2:11692363-11692576 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 20-239
Cow position: chr2:44991491-44991271 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 29

Conread position: 20-248
Cow position: chr2:175728-175496 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 20-248
Cow position: chr2:41172478-41172700 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 125, 27

Conread position: 20-249
Cow position: chr2:26921485-26921706 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 125, 177

Conread position: 27-248
Cow position: chr2:5870544-5870323 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 119, 66

Conread position: 32-242
Cow position: chr2:41686326-41686537 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 108, 79

Conread position: 32-248
Cow position: chr2:49590213-49590430 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 114, 140

Conread position: 32-248
Cow position: chr2:52616282-52616499 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 111, 0

Conread position: 32-248
Cow position: chr2:54737318-54737535 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 113, 0

Conread position: 32-249
Cow position: chr2:4403345-4403127 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 114, 0

Conread position: 35-248
Cow position: chr2:5813563-5813350 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 111, 105

Conread position: 40-248
Cow position: chr2:40538309-40538511 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 110

Conread position: 46-248
Cow position: chr2:24463971-24463766 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 47-248
Cow position: chr2:22077610-22077813 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 121

Conread position: 47-248
Cow position: chr2:59413853-59413652 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 99, 111

Conread position: 59-245
Cow position: chr2:10732925-10732738 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 0

Conread position: 59-248
Cow position: chr2:19011186-19011376 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 86, 105

Conread position: 59-248
Cow position: chr2:80293108-80292918 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 86, 104

Conread position: 60-246
Cow position: chr2:47603405-47603218 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 60-257
Cow position: chr2:24922239-24922436 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 58

Conread position: 67-248
Cow position: chr2:44935074-44934887 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 74-248
Cow position: chr2:16290196-16290371 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 75-248
Cow position: chr2:67419445-67419269 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 76-248
Cow position: chr2:14822979-14823148 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 67, 48

Conread position: 78-238
Cow position: chr2:73193004-73193160 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 59, 65

Conread position: 81-248
Cow position: chr2:903897-904058 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 49

Conread position: 81-248
Cow position: chr2:31297660-31297826 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 16

Conread position: 81-248
Cow position: chr2:42671125-42670957 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 85-248
Cow position: chr2:49604805-49604969 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 53

Conread position: 85-248
Cow position: chr2:76024653-76024809 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 60, 16

Conread position: 86-244
Cow position: chr2:28620158-28619999 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 88-248
Cow position: chr2:6961333-6961494 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 113

Conread position: 95-248
Cow position: chr2:14777942-14777788 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 34

Conread position: 384-539
Cow position: chr2:39787627-39787785 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 29

Conread position: 548-728
Cow position: chr2:47753567-47753392 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 30

Conread position: 548-728
Cow position: chr2:72309970-72309793 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 140, 0

Conread position: 548-730
Cow position: chr2:21410260-21410435 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 78

Conread position: 551-712
Cow position: chr2:38647119-38646961 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 113

Conread position: 553-726
Cow position: chr2:12839996-12839827 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 37

Show alignments to all cow chromosomes.