Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 2-175 |
| Cow position: | chr23:6217121-6217291 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 2-242 |
| Cow position: | chr23:26836915-26837151 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 5-245 |
| Cow position: | chr23:2026866-2026621 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-245 |
| Cow position: | chr23:9545835-9546068 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 5-248 |
| Cow position: | chr23:2341341-2341586 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 5-248 |
| Cow position: | chr23:4640371-4640133 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr23:4888926-4889164 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr23:7046405-7046154 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 128, 24 |
| Conread position: | 5-248 |
| Cow position: | chr23:14965499-14965255 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr23:19489795-19490038 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 5-248 |
| Cow position: | chr23:27399756-27399996 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 5-248 |
| Cow position: | chr23:36031124-36030881 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 6-244 |
| Cow position: | chr23:4510331-4510568 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 6-244 |
| Cow position: | chr23:25683787-25683547 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 6-248 |
| Cow position: | chr23:3014647-3014890 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 6-248 |
| Cow position: | chr23:15525864-15526109 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 6-248 |
| Cow position: | chr23:15877515-15877278 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 27, 151 |
| Conread position: | 7-245 |
| Cow position: | chr23:16616589-16616352 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 7-247 |
| Cow position: | chr23:13509906-13510153 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 7-248 |
| Cow position: | chr23:967093-966845 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 125, 20 |
| Conread position: | 7-248 |
| Cow position: | chr23:5874388-5874158 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 9-240 |
| Cow position: | chr23:4752856-4753083 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 136, 42 |
| Conread position: | 9-248 |
| Cow position: | chr23:17786073-17785832 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 163 |
| Conread position: | 10-244 |
| Cow position: | chr23:2716651-2716881 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 10-248 |
| Cow position: | chr23:20155960-20155719 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 11-248 |
| Cow position: | chr23:15219637-15219407 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 11-248 |
| Cow position: | chr23:28217544-28217780 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr23:31447069-31447305 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-249 |
| Cow position: | chr23:2312986-2312748 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 13-248 |
| Cow position: | chr23:20302463-20302701 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-238 |
| Cow position: | chr23:31594981-31594764 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 18-248 |
| Cow position: | chr23:2757861-2758092 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 18-248 |
| Cow position: | chr23:2781947-2781718 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr23:15177338-15177567 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 18-248 |
| Cow position: | chr23:28913660-28913885 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 18-248 |
| Cow position: | chr23:29452053-29451826 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 19-244 |
| Cow position: | chr23:11778756-11778981 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 20-245 |
| Cow position: | chr23:2574801-2575027 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 172 |
| Conread position: | 32-244 |
| Cow position: | chr23:4434732-4434945 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 47-246 |
| Cow position: | chr23:19950298-19950099 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 47-248 |
| Cow position: | chr23:23830254-23830450 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 116, 86 |
| Conread position: | 59-255 |
| Cow position: | chr23:22146947-22146751 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 79, 192 |
| Conread position: | 60-248 |
| Cow position: | chr23:4360130-4360318 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 85, 139 |
| Conread position: | 66-248 |
| Cow position: | chr23:16615123-16614942 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 75-248 |
| Cow position: | chr23:4817338-4817512 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 81-244 |
| Cow position: | chr23:2794907-2794744 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 548-723 |
| Cow position: | chr23:20744550-20744381 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 548-727 |
| Cow position: | chr23:3967517-3967347 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 172, 71 |
| Conread position: | 548-728 |
| Cow position: | chr23:11314992-11314811 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 70 |
| Conread position: | 548-730 |
| Cow position: | chr23:3431112-3431297 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 109, 60 |
| Conread position: | 548-732 |
| Cow position: | chr23:5449747-5449929 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 551-726 |
| Cow position: | chr23:24926860-24927030 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 553-713 |
| Cow position: | chr23:23114106-23114271 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 553-727 |
| Cow position: | chr23:38455131-38454958 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 625-726 |
| Cow position: | chr23:12602332-12602229 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.