Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 2-234 |
| Cow position: | chr24:13533196-13532965 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 155 |
| Conread position: | 2-248 |
| Cow position: | chr24:36559425-36559178 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 3-243 |
| Cow position: | chr24:6669811-6669573 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 142, 37 |
| Conread position: | 3-248 |
| Cow position: | chr24:12205970-12205729 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 194, 26 |
| Conread position: | 4-245 |
| Cow position: | chr24:148281-148035 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 5-241 |
| Cow position: | chr24:5889212-5888978 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 5-245 |
| Cow position: | chr24:12335436-12335200 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 5-245 |
| Cow position: | chr24:22971429-22971666 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 5-248 |
| Cow position: | chr24:12130635-12130393 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr24:16472234-16472477 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 35 |
| Conread position: | 5-248 |
| Cow position: | chr24:19833724-19833968 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-249 |
| Cow position: | chr24:29187622-29187867 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 6-248 |
| Cow position: | chr24:32846054-32846293 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 6-256 |
| Cow position: | chr24:6336191-6336442 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 139, 49 |
| Conread position: | 7-247 |
| Cow position: | chr24:14872627-14872383 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 35, 71 |
| Conread position: | 7-248 |
| Cow position: | chr24:4415189-4414951 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 138, 218 |
| Conread position: | 8-229 |
| Cow position: | chr24:6048932-6049148 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 135, 113 |
| Conread position: | 9-245 |
| Cow position: | chr24:14333810-14334043 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 137, 10 |
| Conread position: | 10-243 |
| Cow position: | chr24:27734842-27735063 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 11-246 |
| Cow position: | chr24:43814104-43814337 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr24:6646040-6646276 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr24:9188392-9188159 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 11-248 |
| Cow position: | chr24:22793512-22793752 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 11-248 |
| Cow position: | chr24:40549214-40549441 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 11-249 |
| Cow position: | chr24:5992889-5992650 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 13-174 |
| Cow position: | chr24:32332369-32332529 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 7 |
| Conread position: | 13-210 |
| Cow position: | chr24:13302193-13301995 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 14 |
| Conread position: | 13-249 |
| Cow position: | chr24:33739003-33738762 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-205 |
| Cow position: | chr24:12086551-12086740 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 18-237 |
| Cow position: | chr24:17696625-17696406 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 20-244 |
| Cow position: | chr24:33933718-33933945 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 13, 192 |
| Conread position: | 32-248 |
| Cow position: | chr24:13188532-13188749 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 32-248 |
| Cow position: | chr24:44017892-44018109 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 113, 139 |
| Conread position: | 32-249 |
| Cow position: | chr24:6434597-6434816 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 113, 139 |
| Conread position: | 37-245 |
| Cow position: | chr24:14390189-14389981 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 87 |
| Conread position: | 37-248 |
| Cow position: | chr24:7090801-7090586 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 108, 176 |
| Conread position: | 38-248 |
| Cow position: | chr24:6024738-6024529 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 108, 85 |
| Conread position: | 47-249 |
| Cow position: | chr24:8030525-8030728 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 185 |
| Conread position: | 47-249 |
| Cow position: | chr24:29305949-29305745 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 47-249 |
| Cow position: | chr24:30900748-30900554 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 58-223 |
| Cow position: | chr24:1449645-1449807 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 59-248 |
| Cow position: | chr24:16648592-16648401 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 60-237 |
| Cow position: | chr24:16084268-16084090 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-248 |
| Cow position: | chr24:7061781-7061970 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-255 |
| Cow position: | chr24:6538350-6538548 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 61-248 |
| Cow position: | chr24:12484930-12484742 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 65-248 |
| Cow position: | chr24:6084463-6084647 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 74-245 |
| Cow position: | chr24:6660094-6659922 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 81-248 |
| Cow position: | chr24:14754593-14754424 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 95-249 |
| Cow position: | chr24:23505440-23505285 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 525-723 |
| Cow position: | chr24:33230667-33230866 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 547-721 |
| Cow position: | chr24:39791556-39791735 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 552-719 |
| Cow position: | chr24:18313913-18313747 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
Show alignments to all cow chromosomes.