Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 4-248 |
| Cow position: | chr27:1209603-1209846 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 4-248 |
| Cow position: | chr27:25804649-25804413 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 166, 15 |
| Conread position: | 5-248 |
| Cow position: | chr27:14460203-14459960 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr27:15638117-15637876 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-248 |
| Cow position: | chr27:26555409-26555170 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 7-248 |
| Cow position: | chr27:9992946-9992706 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 8-168 |
| Cow position: | chr27:27196376-27196218 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 8-248 |
| Cow position: | chr27:6014052-6014282 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-247 |
| Cow position: | chr27:27752942-27752708 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 134, 26 |
| Conread position: | 11-248 |
| Cow position: | chr27:15541583-15541819 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 11-249 |
| Cow position: | chr27:16034140-16033903 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 14-249 |
| Cow position: | chr27:1138648-1138875 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 18-248 |
| Cow position: | chr27:893474-893704 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 128, 34 |
| Conread position: | 18-248 |
| Cow position: | chr27:23335430-23335660 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 48-249 |
| Cow position: | chr27:15277774-15277572 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 165 |
| Conread position: | 59-248 |
| Cow position: | chr27:5911168-5911358 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 59-248 |
| Cow position: | chr27:9330028-9330218 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 81, 77 |
| Conread position: | 59-248 |
| Cow position: | chr27:28078750-28078937 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 68-245 |
| Cow position: | chr27:27663257-27663435 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 76-245 |
| Cow position: | chr27:15037268-15037098 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 76-245 |
| Cow position: | chr27:15046493-15046661 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 80-249 |
| Cow position: | chr27:22148398-22148566 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 88-248 |
| Cow position: | chr27:26325402-26325563 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 90-248 |
| Cow position: | chr27:22318083-22318242 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 548-713 |
| Cow position: | chr27:30489494-30489660 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 548-723 |
| Cow position: | chr27:788881-789054 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 158, 57 |
| Conread position: | 548-723 |
| Cow position: | chr27:4720196-4720368 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 548-727 |
| Cow position: | chr27:19717831-19717652 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-728 |
| Cow position: | chr27:7212797-7212977 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-713 |
| Cow position: | chr27:16589791-16589955 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.