Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 2-239 |
| Cow position: | chr29:8062233-8061999 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 142, 15 |
| Conread position: | 2-248 |
| Cow position: | chr29:4634138-4633879 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 5-238 |
| Cow position: | chr29:410262-410029 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 5-248 |
| Cow position: | chr29:2100108-2100352 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 5-248 |
| Cow position: | chr29:2841110-2840870 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr29:6266238-6265993 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:10823706-10823463 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr29:14586185-14586422 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:16022793-16023039 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:16174626-16174377 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 5-248 |
| Cow position: | chr29:19622984-19622741 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:19653371-19653609 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:23976103-23976341 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:26164559-26164316 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr29:32540073-32540315 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:38227243-38227486 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr29:43322818-43323060 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 5-251 |
| Cow position: | chr29:2690163-2690410 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 7-238 |
| Cow position: | chr29:25932280-25932046 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 7-248 |
| Cow position: | chr29:15894590-15894350 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 7-248 |
| Cow position: | chr29:40502718-40502477 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 138, 44 |
| Conread position: | 8-245 |
| Cow position: | chr29:15949285-15949047 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 10-243 |
| Cow position: | chr29:802658-802428 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 135, 81 |
| Conread position: | 10-249 |
| Cow position: | chr29:45587096-45586860 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 11-248 |
| Cow position: | chr29:669793-669558 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 11-248 |
| Cow position: | chr29:18856680-18856444 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 11-248 |
| Cow position: | chr29:31181679-31181905 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 11-249 |
| Cow position: | chr29:610348-610112 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-249 |
| Cow position: | chr29:27250078-27249842 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 11-249 |
| Cow position: | chr29:34925743-34925979 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 13-249 |
| Cow position: | chr29:35297135-35297371 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 13-250 |
| Cow position: | chr29:27980653-27980420 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 14-245 |
| Cow position: | chr29:7430946-7430715 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 14-248 |
| Cow position: | chr29:9643485-9643253 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 15-248 |
| Cow position: | chr29:14085862-14085629 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 220 |
| Conread position: | 18-245 |
| Cow position: | chr29:39079435-39079208 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 18-248 |
| Cow position: | chr29:48203-47966 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 18-248 |
| Cow position: | chr29:10647974-10647744 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 18-248 |
| Cow position: | chr29:20251436-20251665 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 29 |
| Conread position: | 18-248 |
| Cow position: | chr29:42650542-42650773 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr29:42802402-42802633 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr29:45459993-45460222 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 18-249 |
| Cow position: | chr29:21426753-21426522 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 19-248 |
| Cow position: | chr29:16016501-16016274 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 19-248 |
| Cow position: | chr29:34799532-34799303 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 20-248 |
| Cow position: | chr29:5957880-5958105 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 31-248 |
| Cow position: | chr29:5982423-5982211 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 114, 23 |
| Conread position: | 32-248 |
| Cow position: | chr29:15968578-15968361 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 32-249 |
| Cow position: | chr29:19885353-19885569 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 113, 124 |
| Conread position: | 47-248 |
| Cow position: | chr29:7844629-7844831 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 60-248 |
| Cow position: | chr29:13582379-13582567 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 162 |
| Conread position: | 60-250 |
| Cow position: | chr29:16110727-16110917 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 113-248 |
| Cow position: | chr29:3045997-3046131 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 422-546 |
| Cow position: | chr29:31907473-31907601 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 123 |
| Conread position: | 547-723 |
| Cow position: | chr29:20579048-20579226 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 548-723 |
| Cow position: | chr29:8926423-8926248 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 152, 69 |
| Conread position: | 548-730 |
| Cow position: | chr29:11527754-11527561 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 548-730 |
| Cow position: | chr29:39329565-39329378 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 553-728 |
| Cow position: | chr29:13373344-13373523 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 554-726 |
| Cow position: | chr29:35630385-35630211 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 554-730 |
| Cow position: | chr29:28949017-28949190 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 613-730 |
| Cow position: | chr29:10156179-10156062 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.