Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 1-248 |
| Cow position: | chr4:19251538-19251782 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 2-248 |
| Cow position: | chr4:1496413-1496160 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-248 |
| Cow position: | chr4:4176776-4177018 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 2-248 |
| Cow position: | chr4:54158626-54158856 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 134 |
| Conread position: | 2-250 |
| Cow position: | chr4:48026379-48026628 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 4-248 |
| Cow position: | chr4:17926270-17926025 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 4-248 |
| Cow position: | chr4:18516882-18517122 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 141, 33 |
| Conread position: | 4-248 |
| Cow position: | chr4:36896352-36896597 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 5-226 |
| Cow position: | chr4:34184536-34184316 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 18, 160 |
| Conread position: | 5-248 |
| Cow position: | chr4:968666-968425 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 5-248 |
| Cow position: | chr4:6490379-6490137 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr4:25599516-25599273 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 140, 106 |
| Conread position: | 5-248 |
| Cow position: | chr4:31565318-31565076 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 5-248 |
| Cow position: | chr4:31669257-31669501 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 5-248 |
| Cow position: | chr4:43319661-43319417 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 5-248 |
| Cow position: | chr4:45049313-45049069 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 5-248 |
| Cow position: | chr4:46664499-46664745 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-248 |
| Cow position: | chr4:60264173-60263935 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 141, 75 |
| Conread position: | 7-182 |
| Cow position: | chr4:54188155-54188313 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 7-237 |
| Cow position: | chr4:44925531-44925297 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 201 |
| Conread position: | 7-248 |
| Cow position: | chr4:22472513-22472757 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 175 |
| Conread position: | 7-248 |
| Cow position: | chr4:26886871-26886632 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 7-248 |
| Cow position: | chr4:43881098-43881338 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 8-182 |
| Cow position: | chr4:47255008-47254838 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 8-248 |
| Cow position: | chr4:19093409-19093648 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 10-248 |
| Cow position: | chr4:16359870-16360111 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 11-248 |
| Cow position: | chr4:3125782-3126018 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr4:5880152-5880388 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr4:18190392-18190628 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr4:18424538-18424302 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-249 |
| Cow position: | chr4:13548016-13548252 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-275 |
| Cow position: | chr4:602980-603244 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 13-248 |
| Cow position: | chr4:16056585-16056823 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 13-249 |
| Cow position: | chr4:32212156-32212391 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 132, 14 |
| Conread position: | 14-245 |
| Cow position: | chr4:28831341-28831566 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 132, 15 |
| Conread position: | 14-248 |
| Cow position: | chr4:12241222-12240988 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 14-263 |
| Cow position: | chr4:11385744-11385979 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 18-245 |
| Cow position: | chr4:33493824-33494051 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 18-248 |
| Cow position: | chr4:355909-356136 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr4:12587298-12587528 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 18-248 |
| Cow position: | chr4:44725083-44725314 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 32-249 |
| Cow position: | chr4:100928-100710 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 32-249 |
| Cow position: | chr4:4416088-4416298 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 38-249 |
| Cow position: | chr4:9354764-9354552 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 47-237 |
| Cow position: | chr4:65223513-65223322 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 98, 124 |
| Conread position: | 47-248 |
| Cow position: | chr4:16326754-16326552 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 98, 124 |
| Conread position: | 59-248 |
| Cow position: | chr4:21256387-21256578 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 86, 174 |
| Conread position: | 60-233 |
| Cow position: | chr4:27333468-27333642 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-248 |
| Cow position: | chr4:1930590-1930402 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-244 |
| Cow position: | chr4:33072773-33072602 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 75-248 |
| Cow position: | chr4:27295463-27295282 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 76-248 |
| Cow position: | chr4:13493365-13493541 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 77-249 |
| Cow position: | chr4:6268581-6268404 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 80-248 |
| Cow position: | chr4:41954527-41954696 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 80-248 |
| Cow position: | chr4:41958182-41958351 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 89-248 |
| Cow position: | chr4:12607601-12607443 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 92-245 |
| Cow position: | chr4:57984053-57984207 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 548-727 |
| Cow position: | chr4:48321489-48321309 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 548-728 |
| Cow position: | chr4:5132366-5132540 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 552-727 |
| Cow position: | chr4:8947432-8947617 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 552-727 |
| Cow position: | chr4:62794327-62794162 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 552-728 |
| Cow position: | chr4:19542169-19542345 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.