Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 1-248 |
| Cow position: | chr5:6155141-6154897 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 1-249 |
| Cow position: | chr5:64781938-64781693 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 144, 20 |
| Conread position: | 2-145 |
| Cow position: | chr5:6180399-6180538 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-243 |
| Cow position: | chr5:41358014-41357774 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 143, 154 |
| Conread position: | 2-248 |
| Cow position: | chr5:28023587-28023832 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 4-248 |
| Cow position: | chr5:46776154-46776396 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 5-244 |
| Cow position: | chr5:61278369-61278129 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 5-245 |
| Cow position: | chr5:415642-415402 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-245 |
| Cow position: | chr5:41528680-41528439 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 5-248 |
| Cow position: | chr5:2914528-2914768 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 5-248 |
| Cow position: | chr5:46660122-46660355 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 149, 82 |
| Conread position: | 5-248 |
| Cow position: | chr5:54792555-54792316 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr5:55628066-55628309 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr5:57482466-57482221 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 6-248 |
| Cow position: | chr5:10918900-10919143 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 6-250 |
| Cow position: | chr5:39246930-39246686 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 139, 15 |
| Conread position: | 7-199 |
| Cow position: | chr5:32945958-32946149 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 7-244 |
| Cow position: | chr5:3504023-3503785 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 7-248 |
| Cow position: | chr5:7273909-7274149 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 7-248 |
| Cow position: | chr5:37732430-37732669 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 8-246 |
| Cow position: | chr5:41957244-41957012 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 8-248 |
| Cow position: | chr5:46738495-46738255 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 137, 43 |
| Conread position: | 8-248 |
| Cow position: | chr5:56857105-56856863 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 10-248 |
| Cow position: | chr5:32309527-32309287 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 11-165 |
| Cow position: | chr5:45182022-45181869 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 11-248 |
| Cow position: | chr5:3964533-3964767 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 11-248 |
| Cow position: | chr5:4019117-4018882 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr5:6588939-6588702 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 11-248 |
| Cow position: | chr5:10482929-10483165 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 11-248 |
| Cow position: | chr5:18666075-18666311 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 11-248 |
| Cow position: | chr5:23960234-23959998 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr5:24576996-24577231 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr5:27909191-27908955 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-248 |
| Cow position: | chr5:31706655-31706891 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 11-248 |
| Cow position: | chr5:32772563-32772810 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 11-248 |
| Cow position: | chr5:48468198-48467962 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr5:59482334-59482572 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 11-249 |
| Cow position: | chr5:4089152-4089389 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-249 |
| Cow position: | chr5:59060699-59060936 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 13-248 |
| Cow position: | chr5:26079140-26078903 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 158 |
| Conread position: | 13-248 |
| Cow position: | chr5:46664086-46664320 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 132, 13 |
| Conread position: | 14-243 |
| Cow position: | chr5:27002125-27002344 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 156, 12 |
| Conread position: | 14-248 |
| Cow position: | chr5:35525909-35526132 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 18-244 |
| Cow position: | chr5:73489467-73489241 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 18-248 |
| Cow position: | chr5:4385340-4385565 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr5:49119187-49118957 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 127, 192 |
| Conread position: | 19-248 |
| Cow position: | chr5:10776179-10775947 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 19-248 |
| Cow position: | chr5:31101535-31101303 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 5, 150 |
| Conread position: | 31-248 |
| Cow position: | chr5:44459582-44459800 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 140 |
| Conread position: | 32-245 |
| Cow position: | chr5:46644785-46644997 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 32-248 |
| Cow position: | chr5:14380249-14380460 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 120, 101 |
| Conread position: | 47-248 |
| Cow position: | chr5:54932103-54931902 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 156 |
| Conread position: | 47-249 |
| Cow position: | chr5:10843304-10843101 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 48-248 |
| Cow position: | chr5:5667937-5667734 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 59-248 |
| Cow position: | chr5:34696735-34696921 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 112 |
| Conread position: | 60-249 |
| Cow position: | chr5:18122340-18122153 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 62-245 |
| Cow position: | chr5:51770813-51770626 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 63-244 |
| Cow position: | chr5:24098805-24098986 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 82, 162 |
| Conread position: | 65-248 |
| Cow position: | chr5:18401565-18401372 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 177 |
| Conread position: | 66-248 |
| Cow position: | chr5:4069355-4069538 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 79, 98 |
| Conread position: | 74-249 |
| Cow position: | chr5:3786074-3786250 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 75-248 |
| Cow position: | chr5:12643576-12643402 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 75-248 |
| Cow position: | chr5:35300242-35300416 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 82-244 |
| Cow position: | chr5:48808578-48808415 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 83-249 |
| Cow position: | chr5:41555456-41555290 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 63, 93 |
| Conread position: | 92-248 |
| Cow position: | chr5:59144531-59144689 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 97-248 |
| Cow position: | chr5:18663957-18664109 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 546-723 |
| Cow position: | chr5:25531276-25531453 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 546-723 |
| Cow position: | chr5:61912242-61912067 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 546-728 |
| Cow position: | chr5:33256410-33256224 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 548-712 |
| Cow position: | chr5:60599138-60598973 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 548-726 |
| Cow position: | chr5:35969598-35969768 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 548-729 |
| Cow position: | chr5:49341983-49341804 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 548-730 |
| Cow position: | chr5:24136781-24136967 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 548-730 |
| Cow position: | chr5:60596066-60595881 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 13, 96 |
| Conread position: | 552-728 |
| Cow position: | chr5:54311406-54311586 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.