Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029M14.5 |
| Conread position: | 1-245 |
| Cow position: | chr9:37162664-37162423 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 201, 36 |
| Conread position: | 2-248 |
| Cow position: | chr9:1980134-1980379 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 2-248 |
| Cow position: | chr9:3566704-3566447 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 2-248 |
| Cow position: | chr9:47002337-47002584 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 2-249 |
| Cow position: | chr9:42556067-42556317 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 134 |
| Conread position: | 4-245 |
| Cow position: | chr9:4532641-4532883 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 5-248 |
| Cow position: | chr9:6830358-6830116 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 5-248 |
| Cow position: | chr9:7002933-7003177 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr9:10321959-10322194 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr9:13476737-13476492 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 5-248 |
| Cow position: | chr9:16175918-16176160 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 5-248 |
| Cow position: | chr9:18509652-18509407 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 5-248 |
| Cow position: | chr9:29628596-29628357 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 5-248 |
| Cow position: | chr9:30672519-30672758 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 5-248 |
| Cow position: | chr9:44818335-44818571 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 5-248 |
| Cow position: | chr9:51182043-51181796 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 5-248 |
| Cow position: | chr9:59174009-59173758 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 6-244 |
| Cow position: | chr9:59425919-59426157 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 6-246 |
| Cow position: | chr9:7012865-7013099 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 6-248 |
| Cow position: | chr9:22653718-22653961 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 6-255 |
| Cow position: | chr9:20308997-20308755 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 7-239 |
| Cow position: | chr9:28688254-28688490 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 138, 25 |
| Conread position: | 7-248 |
| Cow position: | chr9:3393465-3393220 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 7-248 |
| Cow position: | chr9:27034834-27035074 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 139, 37 |
| Conread position: | 7-248 |
| Cow position: | chr9:29328813-29329049 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 138, 22 |
| Conread position: | 7-248 |
| Cow position: | chr9:59536250-59536485 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 8-243 |
| Cow position: | chr9:3803492-3803727 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 137, 51 |
| Conread position: | 8-245 |
| Cow position: | chr9:6050893-6050659 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 8-248 |
| Cow position: | chr9:3354532-3354290 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 138, 23 |
| Conread position: | 8-248 |
| Cow position: | chr9:4281928-4282165 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 8-248 |
| Cow position: | chr9:28021950-28022193 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 144 |
| Conread position: | 8-248 |
| Cow position: | chr9:59511538-59511777 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 9-260 |
| Cow position: | chr9:9646323-9646573 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 10-248 |
| Cow position: | chr9:7061940-7061700 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 11-212 |
| Cow position: | chr9:2487978-2487782 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 11-245 |
| Cow position: | chr9:1076045-1075812 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:131037-130800 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 26 |
| Conread position: | 11-248 |
| Cow position: | chr9:222374-222140 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 11-248 |
| Cow position: | chr9:780652-780416 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:1251842-1251608 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:3006093-3005855 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 132, 36 |
| Conread position: | 11-248 |
| Cow position: | chr9:17064231-17063999 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 15 |
| Conread position: | 11-248 |
| Cow position: | chr9:25755071-25754835 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:28678125-28678361 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-248 |
| Cow position: | chr9:30826834-30827068 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:49177675-49177439 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:51210834-51211070 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 11-248 |
| Cow position: | chr9:60651560-60651324 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 11-249 |
| Cow position: | chr9:25035693-25035456 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 11-249 |
| Cow position: | chr9:27934241-27934477 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 11-249 |
| Cow position: | chr9:31064585-31064822 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 11-249 |
| Cow position: | chr9:36724654-36724891 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 13-249 |
| Cow position: | chr9:16268525-16268761 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 14-248 |
| Cow position: | chr9:42309844-42310076 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 131, 12 |
| Conread position: | 15-248 |
| Cow position: | chr9:37971049-37970816 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 130, 32 |
| Conread position: | 18-237 |
| Cow position: | chr9:1995749-1995531 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 18-248 |
| Cow position: | chr9:29028036-29027810 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 18-248 |
| Cow position: | chr9:42569063-42569295 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 18-248 |
| Cow position: | chr9:60277857-60277628 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 18-249 |
| Cow position: | chr9:25023136-25022908 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 19-248 |
| Cow position: | chr9:9013264-9013492 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 19-248 |
| Cow position: | chr9:64018300-64018073 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 126, 11 |
| Conread position: | 28-243 |
| Cow position: | chr9:4650941-4650727 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 51-245 |
| Cow position: | chr9:6974917-6975113 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 102, 62 |
| Conread position: | 59-248 |
| Cow position: | chr9:64119433-64119612 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 60-226 |
| Cow position: | chr9:163304-163137 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 60-248 |
| Cow position: | chr9:25484070-25484259 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-248 |
| Cow position: | chr9:28440008-28440196 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 60-248 |
| Cow position: | chr9:45873546-45873734 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-245 |
| Cow position: | chr9:60464425-60464242 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 95 |
| Conread position: | 66-248 |
| Cow position: | chr9:59455055-59454872 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 68-248 |
| Cow position: | chr9:3543052-3543233 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 140 |
| Conread position: | 68-248 |
| Cow position: | chr9:31807780-31807959 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 68-249 |
| Cow position: | chr9:12061775-12061957 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 75-249 |
| Cow position: | chr9:50790928-50791103 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 91-249 |
| Cow position: | chr9:34722146-34722301 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 143, 53 |
| Conread position: | 548-724 |
| Cow position: | chr9:55354600-55354423 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 548-728 |
| Cow position: | chr9:8562811-8562628 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 548-728 |
| Cow position: | chr9:23840405-23840579 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 548-729 |
| Cow position: | chr9:4267993-4268178 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 548-729 |
| Cow position: | chr9:19067772-19067592 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 173, 41 |
| Conread position: | 548-730 |
| Cow position: | chr9:34265084-34264906 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 173, 101 |
| Conread position: | 551-727 |
| Cow position: | chr9:18226749-18226923 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 66 |
| Conread position: | 554-710 |
| Cow position: | chr9:56773059-56772905 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.