Cow genome map

Conread name: Ss1.1-Pig4-TMW8029O14.5

Conread position: 1-112
Cow position: chr19:46821164-46821055 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 1-114
Cow position: chr19:12209623-12209737 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 1-126
Cow position: chr19:5026882-5027007 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-138
Cow position: chr19:930129-929994 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 1-138
Cow position: chr19:40849179-40849315 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 1-139
Cow position: chr19:405457-405319 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-143
Cow position: chr19:3551346-3551210 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1-143
Cow position: chr19:12776420-12776280 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 1-143
Cow position: chr19:28450135-28449994 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 1-148
Cow position: chr19:164822-164968 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 140, 0

Conread position: 1-148
Cow position: chr19:776823-776678 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 1-148
Cow position: chr19:7345344-7345198 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 140, 0

Conread position: 1-148
Cow position: chr19:43148891-43148745 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 140, 0

Conread position: 1-151
Cow position: chr19:2588499-2588349 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-151
Cow position: chr19:6555281-6555131 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-151
Cow position: chr19:9704876-9705033 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 1-151
Cow position: chr19:17883275-17883126 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 99, 0

Conread position: 1-151
Cow position: chr19:27082104-27082248 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-151
Cow position: chr19:30518114-30517963 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 1-151
Cow position: chr19:39182230-39182380 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-152
Cow position: chr19:28596686-28596535 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:41643-41490 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 0

Conread position: 1-155
Cow position: chr19:207810-207656 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:436028-436181 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 1-155
Cow position: chr19:799687-799534 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 148, 130

Conread position: 1-155
Cow position: chr19:1293660-1293507 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 148, 42

Conread position: 1-155
Cow position: chr19:1564486-1564640 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:2269991-2270145 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:4388893-4388739 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:5902337-5902183 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:7472370-7472218 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 1-155
Cow position: chr19:7480624-7480778 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:9118120-9117966 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:10613538-10613384 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:15070621-15070467 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:16316897-16317052 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 1-155
Cow position: chr19:16478557-16478710 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 1-155
Cow position: chr19:20403594-20403439 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 128
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 120, 0

Conread position: 1-155
Cow position: chr19:20611644-20611490 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:22512555-22512401 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:24734453-24734299 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:29393652-29393498 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:30037597-30037751 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:30515717-30515871 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:31781881-31781727 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:33119414-33119568 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:33528157-33528003 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:33573407-33573561 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:33876726-33876572 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:35621838-35621684 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 18

Conread position: 1-155
Cow position: chr19:37844470-37844623 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 1-155
Cow position: chr19:39339758-39339909 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 1-155
Cow position: chr19:39394511-39394357 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:39603160-39603314 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:40016276-40016430 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 36, 141

Conread position: 1-155
Cow position: chr19:40791046-40791200 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:41204917-41205071 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:42724976-42724822 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:48626369-48626215 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:55164347-55164501 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:55378205-55378051 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr19:55843314-55843160 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-156
Cow position: chr19:35381764-35381915 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 1-156
Cow position: chr19:42648075-42648230 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 55, 11

Conread position: 1-158
Cow position: chr19:44394863-44395020 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-160
Cow position: chr19:27034511-27034665 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr19:29628544-29628694 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 1-160
Cow position: chr19:40884443-40884594 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 1-167
Cow position: chr19:34906015-34906181 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-174
Cow position: chr19:28801262-28801431 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 1-174
Cow position: chr19:34655810-34655979 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 47, 130

Conread position: 1-185
Cow position: chr19:42466303-42466119 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 146, 157

Conread position: 1-186
Cow position: chr19:14156793-14156975 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 78, 0

Conread position: 1-194
Cow position: chr19:4447524-4447332 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 156

Conread position: 4-151
Cow position: chr19:3033811-3033956 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 4-155
Cow position: chr19:19389141-19388990 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 4-186
Cow position: chr19:30473842-30474021 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 5-155
Cow position: chr19:28369827-28369680 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 7-144
Cow position: chr19:47670214-47670077 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 7-155
Cow position: chr19:5044378-5044523 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 7-155
Cow position: chr19:5732799-5732653 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 99, 52

Conread position: 7-155
Cow position: chr19:33944871-33944723 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 7-155
Cow position: chr19:36351573-36351431 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 7-155
Cow position: chr19:47189141-47189289 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 7-155
Cow position: chr19:48534032-48533884 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 7-156
Cow position: chr19:175772-175623 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 7-160
Cow position: chr19:25085512-25085366 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 37

Conread position: 8-155
Cow position: chr19:39750521-39750379 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 125
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 50, 0

Conread position: 10-155
Cow position: chr19:8206696-8206841 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-144
Cow position: chr19:19172959-19172828 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 14-135
Cow position: chr19:33624876-33624755 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 14-155
Cow position: chr19:34985401-34985259 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 130

Conread position: 15-155
Cow position: chr19:1585813-1585673 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 23-155
Cow position: chr19:40833984-40834115 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 119, 0

Conread position: 28-153
Cow position: chr19:27613502-27613627 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 112

Conread position: 30-155
Cow position: chr19:20672302-20672424 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 39-155
Cow position: chr19:42866746-42866630 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 51-185
Cow position: chr19:20661951-20662083 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 52-155
Cow position: chr19:1663285-1663182 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.