Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 345-626 |
| Cow position: | chr1:83480688-83480958 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 272, 44 |
| Conread position: | 351-610 |
| Cow position: | chr1:67651120-67651372 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 157, 36 |
| Conread position: | 358-597 |
| Cow position: | chr1:42358623-42358856 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 364-734 |
| Cow position: | chr1:53008539-53008907 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 253, 25 |
| Conread position: | 366-526 |
| Cow position: | chr1:94897983-94897822 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 368-611 |
| Cow position: | chr1:73961109-73961346 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 369-684 |
| Cow position: | chr1:95737714-95738030 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 173, 34 |
| Conread position: | 369-730 |
| Cow position: | chr1:37286590-37286232 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 370-589 |
| Cow position: | chr1:3060317-3060107 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 370-722 |
| Cow position: | chr1:77777325-77776984 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 370-732 |
| Cow position: | chr1:56820901-56821262 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 370-739 |
| Cow position: | chr1:73659755-73659392 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 371-739 |
| Cow position: | chr1:58874070-58873704 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 373-519 |
| Cow position: | chr1:84734349-84734205 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 373-597 |
| Cow position: | chr1:15912886-15912657 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 373-612 |
| Cow position: | chr1:61833193-61832958 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 169, 15 |
| Conread position: | 373-622 |
| Cow position: | chr1:49435063-49435305 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 244, 13 |
| Conread position: | 373-632 |
| Cow position: | chr1:74014348-74014608 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 159, 17 |
| Conread position: | 378-490 |
| Cow position: | chr1:44730619-44730508 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 378-622 |
| Cow position: | chr1:94029917-94030154 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 378-631 |
| Cow position: | chr1:62623988-62623749 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 378-631 |
| Cow position: | chr1:73656533-73656285 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 130, 11 |
| Conread position: | 378-750 |
| Cow position: | chr1:102272050-102272414 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 172, 11 |
| Conread position: | 378-758 |
| Cow position: | chr1:7390008-7390383 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 379-622 |
| Cow position: | chr1:35677386-35677145 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 238, 71 |
| Conread position: | 379-739 |
| Cow position: | chr1:30559531-30559892 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 388-512 |
| Cow position: | chr1:95069322-95069447 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 388-567 |
| Cow position: | chr1:50874462-50874287 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 388-626 |
| Cow position: | chr1:63758935-63759167 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 222, 20 |
| Conread position: | 388-628 |
| Cow position: | chr1:58881509-58881275 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 229, 50 |
| Conread position: | 388-663 |
| Cow position: | chr1:46600966-46601242 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 179, 78 |
| Conread position: | 388-739 |
| Cow position: | chr1:63108505-63108162 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 230, 45 |
| Conread position: | 389-520 |
| Cow position: | chr1:54027560-54027689 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 389-530 |
| Cow position: | chr1:79411731-79411870 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 389-611 |
| Cow position: | chr1:102270245-102270026 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 389-615 |
| Cow position: | chr1:2170339-2170554 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 389-615 |
| Cow position: | chr1:83666457-83666671 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 389-631 |
| Cow position: | chr1:45426187-45426427 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 185, 77 |
| Conread position: | 389-663 |
| Cow position: | chr1:100950289-100950563 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 199, 65 |
| Conread position: | 389-664 |
| Cow position: | chr1:55162432-55162161 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 389-716 |
| Cow position: | chr1:43820248-43820565 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 65, 143 |
| Conread position: | 390-518 |
| Cow position: | chr1:51353011-51353140 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 390-596 |
| Cow position: | chr1:273566-273767 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 390-624 |
| Cow position: | chr1:73745066-73744833 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 390-631 |
| Cow position: | chr1:45233644-45233413 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 187, 37 |
| Conread position: | 390-740 |
| Cow position: | chr1:42742078-42742425 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 391-520 |
| Cow position: | chr1:71901054-71901180 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 391-739 |
| Cow position: | chr1:82951507-82951163 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 391-746 |
| Cow position: | chr1:15514728-15514379 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 113, 105 |
| Conread position: | 392-627 |
| Cow position: | chr1:52625676-52625448 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 225, 47 |
| Conread position: | 397-517 |
| Cow position: | chr1:74011246-74011365 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 397-587 |
| Cow position: | chr1:57596571-57596757 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 397-735 |
| Cow position: | chr1:82385904-82386237 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 403-632 |
| Cow position: | chr1:48454209-48454427 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 404-740 |
| Cow position: | chr1:70603249-70602923 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 212, 23 |
| Conread position: | 406-623 |
| Cow position: | chr1:3408790-3408580 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 408-740 |
| Cow position: | chr1:10794818-10795148 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 180, 19 |
| Conread position: | 410-742 |
| Cow position: | chr1:35014900-35015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 417-520 |
| Cow position: | chr1:60074857-60074754 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-740 |
| Cow position: | chr1:74731788-74732103 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 198, 112 |
| Conread position: | 425-741 |
| Cow position: | chr1:29441911-29442234 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 107, 211 |
| Conread position: | 442-663 |
| Cow position: | chr1:63141460-63141246 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 158, 89 |
Show alignments to all cow chromosomes.