Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 344-740 |
| Cow position: | chr11:28221127-28220734 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 354-566 |
| Cow position: | chr11:58070784-58070582 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 184, 25 |
| Conread position: | 360-529 |
| Cow position: | chr11:65620834-65620667 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 368-494 |
| Cow position: | chr11:42874277-42874154 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 368-546 |
| Cow position: | chr11:37977758-37977936 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 19 |
| Conread position: | 368-575 |
| Cow position: | chr11:23469154-23468955 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 370-625 |
| Cow position: | chr11:19848482-19848234 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 370-631 |
| Cow position: | chr11:19848872-19849128 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 370-631 |
| Cow position: | chr11:72454080-72454337 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 120, 12 |
| Conread position: | 371-587 |
| Cow position: | chr11:21646418-21646215 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 179, 18 |
| Conread position: | 371-716 |
| Cow position: | chr11:49453290-49452957 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 372-530 |
| Cow position: | chr11:33987642-33987487 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 373-616 |
| Cow position: | chr11:65442964-65442723 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 373-626 |
| Cow position: | chr11:11887908-11887666 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 373-739 |
| Cow position: | chr11:16743268-16742896 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 244, 15 |
| Conread position: | 373-742 |
| Cow position: | chr11:34643260-34642900 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 378-512 |
| Cow position: | chr11:61055391-61055523 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 378-628 |
| Cow position: | chr11:34115829-34115583 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 239, 8 |
| Conread position: | 378-748 |
| Cow position: | chr11:22295985-22296355 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 239, 11 |
| Conread position: | 379-542 |
| Cow position: | chr11:56268813-56268657 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 379-631 |
| Cow position: | chr11:80319914-80319666 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 380-595 |
| Cow position: | chr11:69294728-69294939 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 384-579 |
| Cow position: | chr11:43847187-43847378 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 384-606 |
| Cow position: | chr11:66086689-66086472 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 203, 47 |
| Conread position: | 388-542 |
| Cow position: | chr11:67872217-67872066 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 388-622 |
| Cow position: | chr11:66871758-66871524 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 388-624 |
| Cow position: | chr11:22923315-22923083 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 182, 25 |
| Conread position: | 388-626 |
| Cow position: | chr11:16729680-16729916 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 229, 108 |
| Conread position: | 388-626 |
| Cow position: | chr11:24514689-24514461 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 229, 143 |
| Conread position: | 388-626 |
| Cow position: | chr11:41280401-41280174 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 122, 78 |
| Conread position: | 388-735 |
| Cow position: | chr11:65155750-65156094 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 388-739 |
| Cow position: | chr11:65117228-65117573 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 388-740 |
| Cow position: | chr11:39175970-39175629 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 389-527 |
| Cow position: | chr11:41159110-41159248 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-568 |
| Cow position: | chr11:62443525-62443348 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 389-586 |
| Cow position: | chr11:47872445-47872640 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 389-612 |
| Cow position: | chr11:66057940-66057718 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 106, 143 |
| Conread position: | 389-626 |
| Cow position: | chr11:54056065-54056289 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 228, 65 |
| Conread position: | 389-678 |
| Cow position: | chr11:18357274-18357562 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 68, 160 |
| Conread position: | 389-736 |
| Cow position: | chr11:25166844-25167175 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 144 |
| Conread position: | 389-739 |
| Cow position: | chr11:70864510-70864854 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 228, 50 |
| Conread position: | 389-740 |
| Cow position: | chr11:52236988-52237332 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 228, 142 |
| Conread position: | 391-617 |
| Cow position: | chr11:8757587-8757369 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 391-749 |
| Cow position: | chr11:15115356-15115707 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 151, 34 |
| Conread position: | 392-518 |
| Cow position: | chr11:77472046-77471919 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 392-636 |
| Cow position: | chr11:55933432-55933675 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 397-739 |
| Cow position: | chr11:75457300-75457641 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 139 |
| Conread position: | 400-532 |
| Cow position: | chr11:48264775-48264647 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 23 |
| Conread position: | 403-583 |
| Cow position: | chr11:23818012-23818189 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 166, 24 |
| Conread position: | 403-745 |
| Cow position: | chr11:2327880-2328217 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 148, 111 |
| Conread position: | 408-615 |
| Cow position: | chr11:49414000-49413796 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 410-574 |
| Cow position: | chr11:11514331-11514169 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 410-626 |
| Cow position: | chr11:52760463-52760254 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 201, 17 |
| Conread position: | 410-739 |
| Cow position: | chr11:20036221-20035898 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 418-631 |
| Cow position: | chr11:39278365-39278576 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 195, 90 |
| Conread position: | 445-738 |
| Cow position: | chr11:76697500-76697207 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 126, 86 |
| Conread position: | 451-627 |
| Cow position: | chr11:75126649-75126474 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 111, 80 |
Show alignments to all cow chromosomes.