Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 334-740 |
| Cow position: | chr12:9591502-9591895 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 354-626 |
| Cow position: | chr12:14316984-14316715 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 357-731 |
| Cow position: | chr12:33483480-33483847 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 359-739 |
| Cow position: | chr12:3993115-3992734 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 229, 31 |
| Conread position: | 365-616 |
| Cow position: | chr12:5196825-5197065 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 369-626 |
| Cow position: | chr12:548743-548987 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 248, 20 |
| Conread position: | 370-614 |
| Cow position: | chr12:4824958-4825191 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 371-597 |
| Cow position: | chr12:22964466-22964248 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 180, 23 |
| Conread position: | 372-605 |
| Cow position: | chr12:31268288-31268514 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 373-531 |
| Cow position: | chr12:23846762-23846609 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 373-739 |
| Cow position: | chr12:33257756-33257403 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 378-521 |
| Cow position: | chr12:25601249-25601389 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 378-733 |
| Cow position: | chr12:22247470-22247826 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 152, 12 |
| Conread position: | 378-739 |
| Cow position: | chr12:25635507-25635162 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 380-616 |
| Cow position: | chr12:31306993-31306761 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 387-589 |
| Cow position: | chr12:2865439-2865637 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 121, 56 |
| Conread position: | 388-518 |
| Cow position: | chr12:31527064-31526936 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 388-612 |
| Cow position: | chr12:15252547-15252329 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 388-626 |
| Cow position: | chr12:33089226-33089464 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 87, 143 |
| Conread position: | 388-658 |
| Cow position: | chr12:31902767-31902502 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 389-573 |
| Cow position: | chr12:39109793-39109616 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 389-594 |
| Cow position: | chr12:3758024-3758227 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 389-614 |
| Cow position: | chr12:40291277-40291500 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 389-616 |
| Cow position: | chr12:26852957-26853172 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 389-726 |
| Cow position: | chr12:10252967-10253302 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 103, 112 |
| Conread position: | 390-615 |
| Cow position: | chr12:26548856-26549075 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 390-631 |
| Cow position: | chr12:6393325-6393568 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 391-626 |
| Cow position: | chr12:14540944-14541178 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 141, 147 |
| Conread position: | 391-739 |
| Cow position: | chr12:27601622-27601277 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 395-736 |
| Cow position: | chr12:38171310-38170968 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 183, 30 |
| Conread position: | 399-627 |
| Cow position: | chr12:22962703-22962480 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 400-631 |
| Cow position: | chr12:8461222-8460993 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 403-733 |
| Cow position: | chr12:38179180-38179504 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 214, 24 |
| Conread position: | 409-624 |
| Cow position: | chr12:35737503-35737707 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 208, 97 |
| Conread position: | 445-739 |
| Cow position: | chr12:40642418-40642707 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 168, 75 |
Show alignments to all cow chromosomes.