Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 330-626 |
| Cow position: | chr13:19284639-19284342 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 346-624 |
| Cow position: | chr13:48352893-48352621 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 346-738 |
| Cow position: | chr13:17535731-17535358 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 271, 8 |
| Conread position: | 368-637 |
| Cow position: | chr13:38992177-38992432 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 249, 21 |
| Conread position: | 369-678 |
| Cow position: | chr13:34733577-34733266 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 370-607 |
| Cow position: | chr13:37626915-37626687 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 370-684 |
| Cow position: | chr13:57389879-57390193 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 373-626 |
| Cow position: | chr13:2935304-2935547 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 373-634 |
| Cow position: | chr13:7235891-7236144 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 373-711 |
| Cow position: | chr13:15720817-15720482 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 378-530 |
| Cow position: | chr13:33625388-33625538 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 379-737 |
| Cow position: | chr13:12532375-12532726 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 379-739 |
| Cow position: | chr13:17791934-17791588 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 239, 9 |
| Conread position: | 382-565 |
| Cow position: | chr13:15988317-15988496 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 388-528 |
| Cow position: | chr13:15389387-15389526 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 388-591 |
| Cow position: | chr13:21318829-21318629 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 388-624 |
| Cow position: | chr13:21291263-21291027 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 388-636 |
| Cow position: | chr13:5968967-5969210 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 388-739 |
| Cow position: | chr13:29192426-29192082 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 389-620 |
| Cow position: | chr13:3381504-3381733 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 389-626 |
| Cow position: | chr13:46256885-46256650 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 49 |
| Conread position: | 389-631 |
| Cow position: | chr13:15869776-15870021 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 182, 143 |
| Conread position: | 389-666 |
| Cow position: | chr13:17701187-17701450 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 389-684 |
| Cow position: | chr13:43761638-43761340 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 159, 60 |
| Conread position: | 389-739 |
| Cow position: | chr13:16964577-16964213 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 18, 144 |
| Conread position: | 390-532 |
| Cow position: | chr13:20051863-20052003 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 390-626 |
| Cow position: | chr13:15811983-15812218 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 76 |
| Conread position: | 391-681 |
| Cow position: | chr13:40915874-40915575 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 391-692 |
| Cow position: | chr13:54400733-54400447 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 253, 96 |
| Conread position: | 395-636 |
| Cow position: | chr13:27676750-27676519 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 397-598 |
| Cow position: | chr13:59215125-59214927 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 178, 70 |
| Conread position: | 397-631 |
| Cow position: | chr13:12993722-12993492 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 220, 108 |
| Conread position: | 397-739 |
| Cow position: | chr13:5815834-5816166 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 403-639 |
| Cow position: | chr13:17942509-17942736 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 213, 22 |
| Conread position: | 411-621 |
| Cow position: | chr13:47567272-47567477 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 417-625 |
| Cow position: | chr13:16978613-16978408 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 91, 14 |
| Conread position: | 417-684 |
| Cow position: | chr13:28799476-28799210 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 221, 49 |
| Conread position: | 418-616 |
| Cow position: | chr13:17564504-17564699 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 419-684 |
| Cow position: | chr13:51202383-51202125 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 244, 19 |
| Conread position: | 420-620 |
| Cow position: | chr13:8675917-8676113 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 173, 46 |
| Conread position: | 426-622 |
| Cow position: | chr13:56510425-56510221 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 139, 108 |
| Conread position: | 428-597 |
| Cow position: | chr13:12190932-12190766 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 435-750 |
| Cow position: | chr13:15638238-15638548 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 182, 96 |
| Conread position: | 462-663 |
| Cow position: | chr13:15967657-15967847 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 155, 53 |
Show alignments to all cow chromosomes.