Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 286-733 |
| Cow position: | chr16:8855143-8855580 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 355-566 |
| Cow position: | chr16:16024612-16024411 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 356-548 |
| Cow position: | chr16:7916861-7916672 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 358-739 |
| Cow position: | chr16:9471379-9471000 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 362-744 |
| Cow position: | chr16:30959969-30960347 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 188, 23 |
| Conread position: | 367-616 |
| Cow position: | chr16:2740972-2740727 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 367-626 |
| Cow position: | chr16:187803-187555 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 368-631 |
| Cow position: | chr16:19051124-19051378 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 249, 17 |
| Conread position: | 370-615 |
| Cow position: | chr16:29616114-29615878 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 373-595 |
| Cow position: | chr16:49206315-49206531 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 169, 16 |
| Conread position: | 373-739 |
| Cow position: | chr16:29314809-29314456 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 244, 16 |
| Conread position: | 374-727 |
| Cow position: | chr16:37121222-37121569 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 378-623 |
| Cow position: | chr16:21343847-21343614 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 378-631 |
| Cow position: | chr16:29384757-29385001 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 239, 11 |
| Conread position: | 378-668 |
| Cow position: | chr16:7557985-7557699 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 388-541 |
| Cow position: | chr16:50689592-50689442 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 388-615 |
| Cow position: | chr16:43347033-43347255 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 388-684 |
| Cow position: | chr16:29570142-29569853 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 388-739 |
| Cow position: | chr16:51672242-51671900 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 215, 90 |
| Conread position: | 388-741 |
| Cow position: | chr16:28077927-28078274 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 388-742 |
| Cow position: | chr16:1544836-1545185 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 388-747 |
| Cow position: | chr16:39171383-39171732 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 225, 39 |
| Conread position: | 389-525 |
| Cow position: | chr16:15216372-15216508 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-626 |
| Cow position: | chr16:2581625-2581390 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 389-631 |
| Cow position: | chr16:21403649-21403409 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 121, 77 |
| Conread position: | 389-631 |
| Cow position: | chr16:29519540-29519775 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 228, 77 |
| Conread position: | 390-746 |
| Cow position: | chr16:8734762-8735115 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 37 |
| Conread position: | 391-736 |
| Cow position: | chr16:28360676-28361015 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 260, 60 |
| Conread position: | 391-739 |
| Cow position: | chr16:26875527-26875183 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 226, 140 |
| Conread position: | 391-744 |
| Cow position: | chr16:51969172-51969524 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 396-585 |
| Cow position: | chr16:15094672-15094850 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 398-629 |
| Cow position: | chr16:10443267-10443045 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 400-631 |
| Cow position: | chr16:36134169-36134395 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 218, 54 |
| Conread position: | 403-631 |
| Cow position: | chr16:12824970-12825194 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 214, 24 |
| Conread position: | 406-595 |
| Cow position: | chr16:45725803-45725986 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 411-625 |
| Cow position: | chr16:52712125-52712339 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 83, 119 |
| Conread position: | 427-626 |
| Cow position: | chr16:42915388-42915582 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 190, 105 |
Show alignments to all cow chromosomes.