Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 348-623 |
| Cow position: | chr18:37526573-37526844 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 269, 39 |
| Conread position: | 357-625 |
| Cow position: | chr18:47468247-47467978 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 215, 16 |
| Conread position: | 366-533 |
| Cow position: | chr18:47278120-47278282 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 366-739 |
| Cow position: | chr18:29664227-29664589 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 251, 21 |
| Conread position: | 368-634 |
| Cow position: | chr18:32619404-32619663 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 207, 21 |
| Conread position: | 368-739 |
| Cow position: | chr18:29829343-29829712 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 369-501 |
| Cow position: | chr18:6841375-6841245 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 370-518 |
| Cow position: | chr18:16231099-16230955 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 370-626 |
| Cow position: | chr18:36852812-36853069 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 371-736 |
| Cow position: | chr18:18027917-18027558 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 246, 17 |
| Conread position: | 373-594 |
| Cow position: | chr18:41794225-41794010 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 373-622 |
| Cow position: | chr18:22488768-22488516 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 373-731 |
| Cow position: | chr18:40669317-40668968 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 385-624 |
| Cow position: | chr18:42777813-42777576 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 107, 116 |
| Conread position: | 388-509 |
| Cow position: | chr18:54690894-54690776 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 388-622 |
| Cow position: | chr18:47515280-47515045 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 145 |
| Conread position: | 388-634 |
| Cow position: | chr18:32936275-32936512 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 209, 15 |
| Conread position: | 388-746 |
| Cow position: | chr18:51155015-51154666 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 202, 111 |
| Conread position: | 389-547 |
| Cow position: | chr18:43882866-43882709 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 389-570 |
| Cow position: | chr18:40361164-40360986 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 47 |
| Conread position: | 389-621 |
| Cow position: | chr18:38463324-38463552 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 389-631 |
| Cow position: | chr18:47649865-47649635 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 228, 33 |
| Conread position: | 390-632 |
| Cow position: | chr18:18944878-18945110 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 226, 76 |
| Conread position: | 390-688 |
| Cow position: | chr18:20076314-20076609 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 117, 61 |
| Conread position: | 390-716 |
| Cow position: | chr18:4746893-4746575 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 102, 48 |
| Conread position: | 390-739 |
| Cow position: | chr18:35698695-35699040 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 391-503 |
| Cow position: | chr18:17220429-17220541 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 391-503 |
| Cow position: | chr18:17235077-17235189 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 391-526 |
| Cow position: | chr18:41127370-41127235 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-739 |
| Cow position: | chr18:26453004-26453349 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 12, 133 |
| Conread position: | 397-626 |
| Cow position: | chr18:31617417-31617645 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 398-530 |
| Cow position: | chr18:52038876-52039008 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 399-626 |
| Cow position: | chr18:9343650-9343864 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 218, 34 |
| Conread position: | 402-626 |
| Cow position: | chr18:44392225-44392441 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 215, 17 |
| Conread position: | 403-739 |
| Cow position: | chr18:24559329-24558997 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 407-631 |
| Cow position: | chr18:20907939-20907718 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 407-637 |
| Cow position: | chr18:49007520-49007744 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 7 |
| Conread position: | 411-634 |
| Cow position: | chr18:34598535-34598318 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 413-744 |
| Cow position: | chr18:23613082-23612750 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 121, 239 |
| Conread position: | 417-678 |
| Cow position: | chr18:29636765-29637025 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 200, 114 |
| Conread position: | 426-621 |
| Cow position: | chr18:32740942-32741129 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 173, 106 |
Show alignments to all cow chromosomes.