Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 318-532 |
| Cow position: | chr2:64226883-64226675 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 360-531 |
| Cow position: | chr2:859416-859592 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 367-625 |
| Cow position: | chr2:75924231-75923976 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 367-626 |
| Cow position: | chr2:13176696-13176448 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 159, 22 |
| Conread position: | 370-563 |
| Cow position: | chr2:74514730-74514916 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 372-632 |
| Cow position: | chr2:68001610-68001872 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 134, 31 |
| Conread position: | 373-626 |
| Cow position: | chr2:16638961-16639208 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 244, 17 |
| Conread position: | 378-730 |
| Cow position: | chr2:61825561-61825205 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 126, 12 |
| Conread position: | 379-627 |
| Cow position: | chr2:64510502-64510745 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 238, 10 |
| Conread position: | 381-561 |
| Cow position: | chr2:55301477-55301296 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 145, 11 |
| Conread position: | 383-597 |
| Cow position: | chr2:74387318-74387527 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 384-617 |
| Cow position: | chr2:6303998-6303769 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 388-614 |
| Cow position: | chr2:47401376-47401158 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 388-616 |
| Cow position: | chr2:62716510-62716732 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 388-631 |
| Cow position: | chr2:45991365-45991131 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 388-718 |
| Cow position: | chr2:67943213-67942897 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 388-739 |
| Cow position: | chr2:64902105-64901766 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 389-506 |
| Cow position: | chr2:14016355-14016240 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 389-518 |
| Cow position: | chr2:9724233-9724104 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-529 |
| Cow position: | chr2:17383894-17384032 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 389-530 |
| Cow position: | chr2:4817859-4817719 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 389-563 |
| Cow position: | chr2:64078216-64078386 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 389-596 |
| Cow position: | chr2:42863191-42862992 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 389-611 |
| Cow position: | chr2:10461664-10461881 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 389-623 |
| Cow position: | chr2:74558306-74558539 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 389-626 |
| Cow position: | chr2:18143587-18143823 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 228, 142 |
| Conread position: | 389-631 |
| Cow position: | chr2:20270112-20269879 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 183, 58 |
| Conread position: | 390-542 |
| Cow position: | chr2:57365599-57365450 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 39 |
| Conread position: | 390-619 |
| Cow position: | chr2:50003405-50003631 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 390-625 |
| Cow position: | chr2:11303113-11302884 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 142, 11 |
| Conread position: | 390-626 |
| Cow position: | chr2:33427216-33427443 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 390-631 |
| Cow position: | chr2:37125636-37125873 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 390-678 |
| Cow position: | chr2:16707185-16706903 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 390-736 |
| Cow position: | chr2:41916566-41916910 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 391-630 |
| Cow position: | chr2:32342729-32342494 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 395-626 |
| Cow position: | chr2:34209360-34209587 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 195, 14 |
| Conread position: | 397-545 |
| Cow position: | chr2:50613675-50613823 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 94, 42 |
| Conread position: | 397-626 |
| Cow position: | chr2:62671550-62671777 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 188, 69 |
| Conread position: | 397-631 |
| Cow position: | chr2:58204853-58205085 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 397-736 |
| Cow position: | chr2:34019812-34019481 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 215, 6 |
| Conread position: | 397-739 |
| Cow position: | chr2:79586277-79586620 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 417-576 |
| Cow position: | chr2:12277497-12277341 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 419-789 |
| Cow position: | chr2:32195861-32196227 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 423-568 |
| Cow position: | chr2:70918239-70918383 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 424-611 |
| Cow position: | chr2:27604598-27604780 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.