Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 347-597 |
| Cow position: | chr3:69947396-69947629 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 356-716 |
| Cow position: | chr3:31095366-31095719 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 360-530 |
| Cow position: | chr3:58266477-58266310 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 367-517 |
| Cow position: | chr3:72968777-72968923 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 367-628 |
| Cow position: | chr3:1320778-1320526 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 213, 22 |
| Conread position: | 368-550 |
| Cow position: | chr3:30697710-30697537 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 368-663 |
| Cow position: | chr3:6678623-6678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 369-635 |
| Cow position: | chr3:15712010-15712268 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 248, 18 |
| Conread position: | 370-684 |
| Cow position: | chr3:58862039-58861736 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 293, 19 |
| Conread position: | 370-739 |
| Cow position: | chr3:25015911-25016278 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 371-596 |
| Cow position: | chr3:48912705-48912922 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 371-636 |
| Cow position: | chr3:81561409-81561155 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 371-741 |
| Cow position: | chr3:65744388-65744755 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 372-763 |
| Cow position: | chr3:7301990-7301591 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 373-507 |
| Cow position: | chr3:24132338-24132475 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 373-530 |
| Cow position: | chr3:62436997-62437152 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 137, 16 |
| Conread position: | 373-624 |
| Cow position: | chr3:79807697-79807450 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 244, 28 |
| Conread position: | 373-663 |
| Cow position: | chr3:68936592-68936319 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 161, 16 |
| Conread position: | 373-733 |
| Cow position: | chr3:69466631-69466970 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 239, 14 |
| Conread position: | 373-747 |
| Cow position: | chr3:34469466-34469102 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 321, 16 |
| Conread position: | 378-739 |
| Cow position: | chr3:36061570-36061216 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 379-626 |
| Cow position: | chr3:21534637-21534398 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 388-529 |
| Cow position: | chr3:8227086-8226944 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 388-562 |
| Cow position: | chr3:18380638-18380810 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 388-566 |
| Cow position: | chr3:57017566-57017744 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 388-575 |
| Cow position: | chr3:21143572-21143383 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 147 |
| Conread position: | 388-622 |
| Cow position: | chr3:20678765-20679001 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 389-529 |
| Cow position: | chr3:59212426-59212562 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 389-546 |
| Cow position: | chr3:26015189-26015342 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 389-561 |
| Cow position: | chr3:75714197-75714029 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 389-684 |
| Cow position: | chr3:30554587-30554311 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 274, 77 |
| Conread position: | 389-718 |
| Cow position: | chr3:29619544-29619863 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 228, 154 |
| Conread position: | 389-722 |
| Cow position: | chr3:27441824-27442154 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 389-739 |
| Cow position: | chr3:48829122-48829465 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 186, 121 |
| Conread position: | 389-739 |
| Cow position: | chr3:48836967-48836624 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 186, 121 |
| Conread position: | 390-611 |
| Cow position: | chr3:5599489-5599274 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 390-616 |
| Cow position: | chr3:3967362-3967141 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 390-632 |
| Cow position: | chr3:22525194-22525437 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 228, 141 |
| Conread position: | 391-528 |
| Cow position: | chr3:50471861-50471724 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-739 |
| Cow position: | chr3:30339557-30339215 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 144 |
| Conread position: | 397-624 |
| Cow position: | chr3:73802721-73802501 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 397-630 |
| Cow position: | chr3:67944009-67943790 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 220, 39 |
| Conread position: | 403-612 |
| Cow position: | chr3:38365225-38365018 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 106 |
| Conread position: | 405-588 |
| Cow position: | chr3:72505565-72505746 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 406-601 |
| Cow position: | chr3:6586586-6586395 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 406-739 |
| Cow position: | chr3:42012461-42012131 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 410-631 |
| Cow position: | chr3:84817331-84817545 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 207, 101 |
| Conread position: | 417-624 |
| Cow position: | chr3:66925257-66925453 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 200, 9 |
| Conread position: | 421-616 |
| Cow position: | chr3:29385586-29385770 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 170, 5 |
| Conread position: | 425-574 |
| Cow position: | chr3:14611438-14611290 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 111 |
Show alignments to all cow chromosomes.