Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 306-624 |
| Cow position: | chr4:40496580-40496266 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 352-739 |
| Cow position: | chr4:56127471-56127101 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 368-739 |
| Cow position: | chr4:14219933-14219569 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 229, 21 |
| Conread position: | 370-581 |
| Cow position: | chr4:44498108-44497901 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 370-631 |
| Cow position: | chr4:33211536-33211270 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 372-624 |
| Cow position: | chr4:40559033-40558792 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 373-625 |
| Cow position: | chr4:5851651-5851415 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 177, 15 |
| Conread position: | 373-626 |
| Cow position: | chr4:21240955-21241200 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 244, 18 |
| Conread position: | 373-630 |
| Cow position: | chr4:28440822-28441077 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 373-723 |
| Cow position: | chr4:32053609-32053950 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 373-754 |
| Cow position: | chr4:43448775-43449147 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 378-528 |
| Cow position: | chr4:25589152-25589299 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 378-569 |
| Cow position: | chr4:14416410-14416225 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 378-624 |
| Cow position: | chr4:39782327-39782570 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 193, 9 |
| Conread position: | 378-626 |
| Cow position: | chr4:10116760-10117008 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 387-595 |
| Cow position: | chr4:26582012-26581803 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 118 |
| Conread position: | 388-533 |
| Cow position: | chr4:62181426-62181571 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-626 |
| Cow position: | chr4:10857188-10856953 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 113 |
| Conread position: | 388-626 |
| Cow position: | chr4:49951571-49951346 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 388-628 |
| Cow position: | chr4:41029491-41029727 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 229, 117 |
| Conread position: | 388-630 |
| Cow position: | chr4:35160472-35160233 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 388-635 |
| Cow position: | chr4:863595-863837 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 132 |
| Conread position: | 388-720 |
| Cow position: | chr4:49454349-49454026 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 224, 144 |
| Conread position: | 389-577 |
| Cow position: | chr4:49263242-49263060 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 389-583 |
| Cow position: | chr4:21081065-21081255 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 389-606 |
| Cow position: | chr4:41058630-41058843 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 389-611 |
| Cow position: | chr4:26964133-26963915 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 178, 24 |
| Conread position: | 389-620 |
| Cow position: | chr4:49862212-49861988 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 390-528 |
| Cow position: | chr4:28250958-28250821 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 390-620 |
| Cow position: | chr4:14041135-14041362 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 144, 37 |
| Conread position: | 391-626 |
| Cow position: | chr4:20570735-20570500 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 141, 123 |
| Conread position: | 392-625 |
| Cow position: | chr4:23853046-23852822 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 225, 74 |
| Conread position: | 392-678 |
| Cow position: | chr4:60882107-60881828 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 226, 46 |
| Conread position: | 395-742 |
| Cow position: | chr4:10766235-10766579 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 172, 136 |
| Conread position: | 397-513 |
| Cow position: | chr4:53916056-53916169 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 397-576 |
| Cow position: | chr4:51569063-51569240 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 170, 134 |
| Conread position: | 397-739 |
| Cow position: | chr4:34904674-34904338 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 220, 68 |
| Conread position: | 403-631 |
| Cow position: | chr4:50223537-50223314 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 210, 63 |
| Conread position: | 403-739 |
| Cow position: | chr4:43466728-43466397 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 91, 63 |
| Conread position: | 406-624 |
| Cow position: | chr4:15238452-15238680 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 406-626 |
| Cow position: | chr4:19195973-19195767 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 211, 100 |
| Conread position: | 406-742 |
| Cow position: | chr4:53962841-53962509 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 412-624 |
| Cow position: | chr4:55914785-55914576 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 417-626 |
| Cow position: | chr4:3593594-3593389 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 49 |
| Conread position: | 417-714 |
| Cow position: | chr4:65460045-65459753 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 199, 114 |
Show alignments to all cow chromosomes.