Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 319-711 |
| Cow position: | chr5:55275954-55276334 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 339-612 |
| Cow position: | chr5:27410651-27410387 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 356-588 |
| Cow position: | chr5:15769934-15770157 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 368-530 |
| Cow position: | chr5:48384697-48384855 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 370-738 |
| Cow position: | chr5:48104339-48103977 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 372-602 |
| Cow position: | chr5:21172742-21172962 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 373-502 |
| Cow position: | chr5:44892813-44892939 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 373-570 |
| Cow position: | chr5:45739163-45738970 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 375-626 |
| Cow position: | chr5:22196114-22195876 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 242, 15 |
| Conread position: | 387-739 |
| Cow position: | chr5:30834606-30834950 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 164, 46 |
| Conread position: | 388-490 |
| Cow position: | chr5:14292728-14292626 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 388-612 |
| Cow position: | chr5:39717501-39717281 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 388-624 |
| Cow position: | chr5:67672574-67672811 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 148 |
| Conread position: | 388-632 |
| Cow position: | chr5:36429434-36429189 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 388-663 |
| Cow position: | chr5:3220037-3220317 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 194, 75 |
| Conread position: | 388-737 |
| Cow position: | chr5:72558500-72558156 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 388-739 |
| Cow position: | chr5:11365405-11365058 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 191, 15 |
| Conread position: | 388-743 |
| Cow position: | chr5:3600362-3600701 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 225, 15 |
| Conread position: | 389-597 |
| Cow position: | chr5:39022038-39021833 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 389-626 |
| Cow position: | chr5:2181828-2181595 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 188, 38 |
| Conread position: | 389-626 |
| Cow position: | chr5:2875348-2875114 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 389-626 |
| Cow position: | chr5:44914930-44915169 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 181, 77 |
| Conread position: | 389-631 |
| Cow position: | chr5:58520637-58520886 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 135 |
| Conread position: | 389-742 |
| Cow position: | chr5:43925449-43925799 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 390-631 |
| Cow position: | chr5:39988594-39988831 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 144, 48 |
| Conread position: | 391-618 |
| Cow position: | chr5:31601769-31601544 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 189, 141 |
| Conread position: | 392-608 |
| Cow position: | chr5:49363524-49363736 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 171, 137 |
| Conread position: | 392-742 |
| Cow position: | chr5:23962117-23961772 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 225, 24 |
| Conread position: | 395-530 |
| Cow position: | chr5:10481396-10481261 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 397-526 |
| Cow position: | chr5:39697103-39696976 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 397-548 |
| Cow position: | chr5:23267909-23268056 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 397-723 |
| Cow position: | chr5:37842596-37842278 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 153, 25 |
| Conread position: | 399-631 |
| Cow position: | chr5:48118783-48119018 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 401-526 |
| Cow position: | chr5:5402850-5402726 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 406-631 |
| Cow position: | chr5:19295614-19295832 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 211, 65 |
| Conread position: | 417-629 |
| Cow position: | chr5:29363405-29363613 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 183, 10 |
| Conread position: | 417-739 |
| Cow position: | chr5:56315659-56315345 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 153, 25 |
| Conread position: | 417-740 |
| Cow position: | chr5:17355215-17354900 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 441-627 |
| Cow position: | chr5:67897436-67897246 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 25 |
Show alignments to all cow chromosomes.