Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 305-597 |
| Cow position: | chr6:33512093-33512372 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 348-616 |
| Cow position: | chr6:51426841-51427101 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 164 |
| Conread position: | 355-740 |
| Cow position: | chr6:56371728-56372121 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 357-630 |
| Cow position: | chr6:28845162-28844894 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 360-625 |
| Cow position: | chr6:6527906-6527645 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 226, 29 |
| Conread position: | 366-611 |
| Cow position: | chr6:5411230-5410992 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 368-612 |
| Cow position: | chr6:68653686-68653447 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 205, 19 |
| Conread position: | 369-520 |
| Cow position: | chr6:64059302-64059152 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 20 |
| Conread position: | 369-631 |
| Cow position: | chr6:42149726-42149968 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 248, 12 |
| Conread position: | 369-634 |
| Cow position: | chr6:68636546-68636292 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 370-575 |
| Cow position: | chr6:30415338-30415536 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 370-583 |
| Cow position: | chr6:29572910-29572701 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 370-603 |
| Cow position: | chr6:46375337-46375563 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 370-626 |
| Cow position: | chr6:30280789-30280537 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 371-574 |
| Cow position: | chr6:34110108-34110304 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 371-735 |
| Cow position: | chr6:47813493-47813147 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 246, 19 |
| Conread position: | 371-737 |
| Cow position: | chr6:37778372-37778730 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 373-524 |
| Cow position: | chr6:23493483-23493633 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 373-626 |
| Cow position: | chr6:16761725-16761483 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 381-623 |
| Cow position: | chr6:44247593-44247355 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 388-503 |
| Cow position: | chr6:34113272-34113387 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-526 |
| Cow position: | chr6:24265208-24265346 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-563 |
| Cow position: | chr6:62915981-62916151 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 388-591 |
| Cow position: | chr6:15740815-15741017 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 89 |
| Conread position: | 388-622 |
| Cow position: | chr6:62267787-62268012 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 229, 122 |
| Conread position: | 388-626 |
| Cow position: | chr6:21538508-21538278 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 388-631 |
| Cow position: | chr6:17782273-17782035 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 189, 39 |
| Conread position: | 388-740 |
| Cow position: | chr6:13360929-13360579 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 389-520 |
| Cow position: | chr6:21161539-21161411 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 389-525 |
| Cow position: | chr6:15644248-15644114 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 389-574 |
| Cow position: | chr6:31014575-31014755 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 389-585 |
| Cow position: | chr6:51434974-51434780 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 183, 142 |
| Conread position: | 389-595 |
| Cow position: | chr6:8148775-8148977 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 202, 28 |
| Conread position: | 389-611 |
| Cow position: | chr6:51896175-51896377 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 389-622 |
| Cow position: | chr6:43784391-43784619 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 183, 9 |
| Conread position: | 389-624 |
| Cow position: | chr6:30340694-30340921 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 228, 88 |
| Conread position: | 389-626 |
| Cow position: | chr6:34830602-34830829 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 389-626 |
| Cow position: | chr6:43895325-43895093 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 389-629 |
| Cow position: | chr6:3603020-3603254 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 228, 77 |
| Conread position: | 389-738 |
| Cow position: | chr6:59072330-59071984 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 390-616 |
| Cow position: | chr6:52056025-52055805 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 390-636 |
| Cow position: | chr6:60106221-60106457 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 390-731 |
| Cow position: | chr6:29868710-29868374 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 27 |
| Conread position: | 390-739 |
| Cow position: | chr6:23701797-23701452 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 227, 40 |
| Conread position: | 390-743 |
| Cow position: | chr6:2954761-2954415 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 227, 27 |
| Conread position: | 391-763 |
| Cow position: | chr6:47606314-47606679 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 226, 42 |
| Conread position: | 396-739 |
| Cow position: | chr6:23447913-23447577 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 157, 7 |
| Conread position: | 398-615 |
| Cow position: | chr6:38756730-38756520 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 399-741 |
| Cow position: | chr6:54386891-54387229 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 168, 65 |
| Conread position: | 400-717 |
| Cow position: | chr6:2988925-2988615 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 217, 67 |
| Conread position: | 401-583 |
| Cow position: | chr6:51260127-51259951 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 403-739 |
| Cow position: | chr6:67830917-67831244 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 194, 16 |
| Conread position: | 410-743 |
| Cow position: | chr6:67034641-67034963 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 204, 39 |
| Conread position: | 425-594 |
| Cow position: | chr6:54491881-54492048 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 90 |
| Conread position: | 426-622 |
| Cow position: | chr6:25104780-25104974 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 182, 12 |
| Conread position: | 426-672 |
| Cow position: | chr6:27959951-27960194 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 163, 105 |
| Conread position: | 427-631 |
| Cow position: | chr6:33935563-33935363 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 149, 92 |
Show alignments to all cow chromosomes.