Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030B08.3 |
| Conread position: | 284-545 |
| Cow position: | chr9:27331810-27332063 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 248, 27 |
| Conread position: | 343-628 |
| Cow position: | chr9:9659515-9659231 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 350-568 |
| Cow position: | chr9:26709198-26709409 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 350-626 |
| Cow position: | chr9:12382024-12382289 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 356-626 |
| Cow position: | chr9:44178001-44178262 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 361-516 |
| Cow position: | chr9:17278969-17279123 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 367-520 |
| Cow position: | chr9:24201176-24201027 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 22 |
| Conread position: | 368-520 |
| Cow position: | chr9:17717566-17717419 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 368-739 |
| Cow position: | chr9:12693002-12692632 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 19 |
| Conread position: | 370-548 |
| Cow position: | chr9:33501032-33501211 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 373-531 |
| Cow position: | chr9:42055137-42054974 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 373-570 |
| Cow position: | chr9:12334723-12334533 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 373-628 |
| Cow position: | chr9:46284743-46284495 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 240, 14 |
| Conread position: | 378-506 |
| Cow position: | chr9:8834891-8835017 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 378-646 |
| Cow position: | chr9:15995169-15994899 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 388-612 |
| Cow position: | chr9:30758998-30758778 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 388-632 |
| Cow position: | chr9:46248088-46248320 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 229, 42 |
| Conread position: | 388-678 |
| Cow position: | chr9:50768508-50768217 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 389-626 |
| Cow position: | chr9:34039123-34039349 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 223, 49 |
| Conread position: | 389-629 |
| Cow position: | chr9:63169259-63169028 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 228, 77 |
| Conread position: | 389-631 |
| Cow position: | chr9:15350595-15350359 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 228, 160 |
| Conread position: | 389-631 |
| Cow position: | chr9:49859835-49860075 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 389-744 |
| Cow position: | chr9:46492299-46492658 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 228, 142 |
| Conread position: | 390-530 |
| Cow position: | chr9:12449326-12449186 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-626 |
| Cow position: | chr9:49746088-49745867 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 227, 48 |
| Conread position: | 391-602 |
| Cow position: | chr9:31137000-31136795 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 391-687 |
| Cow position: | chr9:29148055-29148353 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 220, 140 |
| Conread position: | 391-739 |
| Cow position: | chr9:50584133-50583790 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 226, 88 |
| Conread position: | 392-623 |
| Cow position: | chr9:40278961-40278738 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 225, 123 |
| Conread position: | 397-563 |
| Cow position: | chr9:47714213-47714375 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 397-742 |
| Cow position: | chr9:28433675-28433338 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 107, 136 |
| Conread position: | 398-631 |
| Cow position: | chr9:41021581-41021360 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 219, 29 |
| Conread position: | 402-625 |
| Cow position: | chr9:53072690-53072911 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 215, 129 |
| Conread position: | 411-741 |
| Cow position: | chr9:50780467-50780800 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 418-611 |
| Cow position: | chr9:46655512-46655329 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 418-625 |
| Cow position: | chr9:46601753-46601950 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 188, 84 |
| Conread position: | 423-616 |
| Cow position: | chr9:42559748-42559940 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 43 |
| Conread position: | 423-626 |
| Cow position: | chr9:13143441-13143641 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 457-739 |
| Cow position: | chr9:46248696-46248978 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 134, 64 |
Show alignments to all cow chromosomes.