Cow genome map

Conread name: Ss1.1-Pig4-TMW8030K08.5

Conread position: 3-524
Cow position: chr14:25795456-25794935 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 318
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 72

Conread position: 3-530
Cow position: chr14:25795036-25794509 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 250

Conread position: 4-372
Cow position: chr14:25794531-25794162 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 232
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 193, 0

Conread position: 4-532
Cow position: chr14:25783491-25784018 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 149

Conread position: 5-320
Cow position: chr14:3080026-3079711 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 199
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 5-363
Cow position: chr14:3156130-3156488 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 225
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 5-367
Cow position: chr14:3155473-3155835 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 219
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 81, 92

Conread position: 5-400
Cow position: chr14:3127706-3127311 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 249
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 336, 327

Conread position: 5-523
Cow position: chr14:3100939-3100423 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 318
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 286, 72

Conread position: 5-532
Cow position: chr14:25783828-25784354 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 524, 0

Conread position: 6-402
Cow position: chr14:25784333-25784729 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 250
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 6-477
Cow position: chr14:25783409-25783880 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-478
Cow position: chr14:25783997-25784469 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-517
Cow position: chr14:25836532-25837043 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 305
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 6-525
Cow position: chr14:25794781-25794261 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 154

Conread position: 6-532
Cow position: chr14:25783577-25784102 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 523, 0

Conread position: 6-532
Cow position: chr14:25783745-25784270 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 523, 0

Conread position: 6-532
Cow position: chr14:25795285-25794760 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 63

Conread position: 7-486
Cow position: chr14:3101272-3100796 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 305
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 10, 159

Conread position: 8-496
Cow position: chr14:25876555-25877042 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 304
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 6

Conread position: 11-356
Cow position: chr14:447911-448256 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 210
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 11-394
Cow position: chr14:25877481-25877864 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 236
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 165, 142

Conread position: 11-523
Cow position: chr14:25910737-25911245 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 310
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 241, 53

Conread position: 12-271
Cow position: chr14:420630-420889 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 169
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 55, 61

Conread position: 12-400
Cow position: chr14:3156053-3156441 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 247
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 12-448
Cow position: chr14:25860347-25860783 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 268
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 42

Conread position: 12-463
Cow position: chr14:3080691-3080240 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 273
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 415, 402

Conread position: 12-478
Cow position: chr14:25860263-25860729 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 282
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 64

Conread position: 12-478
Cow position: chr14:25910818-25911284 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 280
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 455, 446

Conread position: 12-484
Cow position: chr14:25859339-25859812 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 288
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 107, 115

Conread position: 12-486
Cow position: chr14:25836118-25836592 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-488
Cow position: chr14:25784171-25784647 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-523
Cow position: chr14:680714-681225 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 318
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 306, 322

Conread position: 12-523
Cow position: chr14:3080355-3079844 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 311
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 393, 421

Conread position: 12-523
Cow position: chr14:3127867-3127356 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 315
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 497, 491

Conread position: 12-523
Cow position: chr14:25876810-25877321 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 320
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 105, 110

Conread position: 12-524
Cow position: chr14:447744-448256 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 321
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 52, 45

Conread position: 12-524
Cow position: chr14:25877314-25877826 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 303
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 309, 315

Conread position: 12-525
Cow position: chr14:25783331-25783844 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-530
Cow position: chr14:447576-448094 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 319
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 392, 420

Conread position: 12-530
Cow position: chr14:25859843-25860361 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 328
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 168, 149

Conread position: 12-532
Cow position: chr14:25794859-25794340 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 144

Conread position: 13-280
Cow position: chr14:25836959-25837226 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 167
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-483
Cow position: chr14:25876895-25877366 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 299
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 41, 58

Conread position: 13-523
Cow position: chr14:3128118-3127608 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 309
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 13-523
Cow position: chr14:25836203-25836713 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-523
Cow position: chr14:25895774-25896284 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 298
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 41

Conread position: 13-524
Cow position: chr14:25836707-25837218 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 318
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 57

Conread position: 14-502
Cow position: chr14:25794941-25794453 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 59

Conread position: 14-532
Cow position: chr14:25784089-25784606 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 515, 0

Conread position: 14-534
Cow position: chr14:3101095-3100580 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 312
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 404, 35

Conread position: 15-400
Cow position: chr14:433884-434269 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 240
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 56, 66

Conread position: 15-400
Cow position: chr14:433968-434353 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 232
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 325, 313

Conread position: 15-467
Cow position: chr14:25794604-25794153 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 444

Conread position: 15-483
Cow position: chr14:25860182-25860651 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 282
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 161, 154

Conread position: 15-486
Cow position: chr14:3080268-3079797 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 295
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 381, 417

Conread position: 15-488
Cow position: chr14:680801-681274 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 310

Conread position: 16-484
Cow position: chr14:25784259-25784727 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 137

Conread position: 16-532
Cow position: chr14:25783923-25784438 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 137

Conread position: 18-364
Cow position: chr14:25836880-25837226 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 217
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 52

Conread position: 18-441
Cow position: chr14:3156311-3156725 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 261
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 241, 179

Conread position: 18-478
Cow position: chr14:25859429-25859889 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 280
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 109, 80

Conread position: 18-478
Cow position: chr14:25860017-25860477 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 281
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 75, 82

Conread position: 18-478
Cow position: chr14:25877068-25877528 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 280
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 82

Conread position: 18-478
Cow position: chr14:25877152-25877612 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 274
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 72

Conread position: 18-479
Cow position: chr14:25836460-25836921 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 292
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 147, 135

Conread position: 18-486
Cow position: chr14:3080181-3079713 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 289
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 18-502
Cow position: chr14:3080433-3079949 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-523
Cow position: chr14:3061244-3060739 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 301
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 135, 140

Conread position: 18-523
Cow position: chr14:3080601-3080096 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 462, 475

Conread position: 18-523
Cow position: chr14:3127777-3127272 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 305
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 45, 55

Conread position: 18-523
Cow position: chr14:3155975-3156480 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-523
Cow position: chr14:25836628-25837133 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 307
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 379, 402

Conread position: 18-523
Cow position: chr14:25859765-25860270 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 306
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 72

Conread position: 18-534
Cow position: chr14:3080517-3080001 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 314
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 46, 36

Conread position: 26-478
Cow position: chr14:25860109-25860561 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 274
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 43, 64

Conread position: 27-478
Cow position: chr14:25836049-25836500 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 279
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 306, 294

Conread position: 78-478
Cow position: chr14:25895587-25895987 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 243
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 243, 247

Conread position: 79-523
Cow position: chr14:680697-681141 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 270
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 350, 360

Conread position: 90-403
Cow position: chr14:3061676-3061363 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 198
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 239, 230

Conread position: 90-523
Cow position: chr14:447570-448003 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 273
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 231, 235

Conread position: 94-517
Cow position: chr14:3155883-3156306 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 272
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 83, 90

Conread position: 94-523
Cow position: chr14:25859337-25859766 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 266
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 177, 168

Conread position: 94-532
Cow position: chr14:25783329-25783766 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 59

Conread position: 96-523
Cow position: chr14:680376-680805 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 252
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 98-488
Cow position: chr14:25859257-25859648 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 247
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 190, 197

Conread position: 98-530
Cow position: chr14:25859173-25859605 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 258
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 53, 62

Conread position: 100-525
Cow position: chr14:25910742-25911163 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 253
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 221, 48

Conread position: 105-523
Cow position: chr14:25876565-25876985 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 263
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 237

Conread position: 110-532
Cow position: chr14:25836048-25836469 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 252
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 419, 0

Conread position: 111-523
Cow position: chr14:3155411-3155823 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 260
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 205, 214

Conread position: 125-479
Cow position: chr14:25876503-25876857 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 219
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 217, 201

Conread position: 126-530
Cow position: chr14:3080913-3080509 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 249
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 15

Conread position: 162-524
Cow position: chr14:25795465-25795103 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 236
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 171, 158

Conread position: 162-532
Cow position: chr14:25783313-25783682 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 0

Conread position: 173-490
Cow position: chr14:3101439-3101122 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 148, 116

Conread position: 192-523
Cow position: chr14:3155408-3155739 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 209
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 221, 226

Conread position: 195-526
Cow position: chr14:3155900-3156231 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 207
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 248-532
Cow position: chr14:25795463-25795180 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 182
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 76

Conread position: 255-530
Cow position: chr14:3101441-3101167 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 181
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 175, 108

Conread position: 262-484
Cow position: chr14:3155394-3155616 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.