Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030K08.5 |
| Conread position: | 3-475 |
| Cow position: | chr17:22452151-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 4-233 |
| Cow position: | chr17:22473733-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 4-485 |
| Cow position: | chr17:22589703-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-486 |
| Cow position: | chr17:22552284-22551803 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 239 |
| Conread position: | 6-474 |
| Cow position: | chr17:22473483-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 0 |
| Conread position: | 6-484 |
| Cow position: | chr17:22590121-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 252 |
| Conread position: | 6-523 |
| Cow position: | chr17:22473399-22473916 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 6-525 |
| Cow position: | chr17:22452400-22451881 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 135 |
| Conread position: | 6-525 |
| Cow position: | chr17:22552535-22552016 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 156 |
| Conread position: | 6-525 |
| Cow position: | chr17:22552703-22552184 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 334 |
| Conread position: | 6-525 |
| Cow position: | chr17:22590205-22589686 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-523 |
| Cow position: | chr17:22590284-22589772 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 12-476 |
| Cow position: | chr17:22452058-22451594 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-497 |
| Cow position: | chr17:22452226-22451741 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 472 |
| Conread position: | 12-502 |
| Cow position: | chr17:22552193-22551703 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 12-503 |
| Cow position: | chr17:22553117-22552626 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 110 |
| Conread position: | 12-519 |
| Cow position: | chr17:22499072-22498565 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 308 |
| Conread position: | 12-524 |
| Cow position: | chr17:22452310-22451798 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 12-524 |
| Cow position: | chr17:22499324-22498812 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-524 |
| Cow position: | chr17:22589863-22589351 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 403 |
| Conread position: | 12-525 |
| Cow position: | chr17:22552025-22551512 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 12-525 |
| Cow position: | chr17:22552445-22551932 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 12-525 |
| Cow position: | chr17:22552949-22552436 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 12-525 |
| Cow position: | chr17:22589779-22589266 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 12-530 |
| Cow position: | chr17:22499156-22498638 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-503 |
| Cow position: | chr17:22473322-22473812 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-519 |
| Cow position: | chr17:22590029-22589524 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-607 |
| Cow position: | chr17:22473242-22473839 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 21 |
| Conread position: | 15-525 |
| Cow position: | chr17:22499237-22498727 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 311 |
| Conread position: | 18-295 |
| Cow position: | chr17:22551767-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 70 |
| Conread position: | 18-471 |
| Cow position: | chr17:22498982-22498529 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 90 |
| Conread position: | 18-484 |
| Cow position: | chr17:22552607-22552141 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 401 |
| Conread position: | 18-485 |
| Cow position: | chr17:22552355-22551888 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 401 |
| Conread position: | 18-525 |
| Cow position: | chr17:22552103-22551596 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 226 |
| Conread position: | 18-532 |
| Cow position: | chr17:22552775-22552262 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 406 |
| Conread position: | 30-403 |
| Cow position: | chr17:41441118-41440745 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 79-530 |
| Cow position: | chr17:22452411-22451960 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 90-484 |
| Cow position: | chr17:22589869-22589474 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 344 |
| Conread position: | 90-525 |
| Cow position: | chr17:22590289-22589854 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 314, 343 |
| Conread position: | 94-525 |
| Cow position: | chr17:22499326-22498895 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 397 |
| Conread position: | 110-502 |
| Cow position: | chr17:22499394-22499002 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 212 |
| Conread position: | 135-485 |
| Cow position: | chr17:41440593-41440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 294, 301 |
| Conread position: | 166-525 |
| Cow position: | chr17:22590297-22589938 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 232, 269 |
| Conread position: | 195-530 |
| Cow position: | chr17:22499393-22499059 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 330, 0 |
| Conread position: | 243-523 |
| Cow position: | chr17:22590304-22590024 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-530 |
| Cow position: | chr17:22499423-22499142 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 24, 17 |
Show alignments to all cow chromosomes.