Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030K08.5 |
| Conread position: | 3-395 |
| Cow position: | chr19:20636137-20635754 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 232, 88 |
| Conread position: | 3-485 |
| Cow position: | chr19:14960078-14959612 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 338, 264 |
| Conread position: | 3-525 |
| Cow position: | chr19:14940303-14940825 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 153 |
| Conread position: | 4-486 |
| Cow position: | chr19:23613580-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 4-523 |
| Cow position: | chr19:23614000-23614519 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 317 |
| Conread position: | 4-566 |
| Cow position: | chr19:23614588-23615149 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 160 |
| Conread position: | 5-335 |
| Cow position: | chr19:14948318-14947988 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 5-399 |
| Cow position: | chr19:23650039-23650434 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 156, 148 |
| Conread position: | 5-479 |
| Cow position: | chr19:14940053-14940527 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-482 |
| Cow position: | chr19:14959588-14959120 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 160, 149 |
| Conread position: | 5-502 |
| Cow position: | chr19:14940557-14941054 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-506 |
| Cow position: | chr19:43570243-43569742 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 5-519 |
| Cow position: | chr19:20677512-20678026 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-523 |
| Cow position: | chr19:14940389-14940907 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 5-532 |
| Cow position: | chr19:14940137-14940663 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 319 |
| Conread position: | 5-532 |
| Cow position: | chr19:14959420-14958909 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 6-456 |
| Cow position: | chr19:23597263-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 6-458 |
| Cow position: | chr19:20635399-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 6-458 |
| Cow position: | chr19:20678353-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 233 |
| Conread position: | 6-467 |
| Cow position: | chr19:20635483-20635022 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 154 |
| Conread position: | 6-530 |
| Cow position: | chr19:20635567-20635043 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 238 |
| Conread position: | 6-530 |
| Cow position: | chr19:23613498-23614022 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 148 |
| Conread position: | 6-604 |
| Cow position: | chr19:20677849-20678454 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 6-604 |
| Cow position: | chr19:20678185-20678787 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 382 |
| Conread position: | 11-446 |
| Cow position: | chr19:14959255-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 11-619 |
| Cow position: | chr19:20677686-20678301 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 12-311 |
| Cow position: | chr19:43569984-43569689 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 12-396 |
| Cow position: | chr19:14948395-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 12-445 |
| Cow position: | chr19:14960153-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 314 |
| Conread position: | 12-484 |
| Cow position: | chr19:14959663-14959202 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 413, 12 |
| Conread position: | 12-496 |
| Cow position: | chr19:23614176-23614660 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-516 |
| Cow position: | chr19:23649458-23649962 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 142 |
| Conread position: | 12-518 |
| Cow position: | chr19:14960319-14959815 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 12-523 |
| Cow position: | chr19:14940228-14940739 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 313 |
| Conread position: | 12-523 |
| Cow position: | chr19:20678023-20678534 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 480 |
| Conread position: | 12-523 |
| Cow position: | chr19:23649878-23650389 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 12-525 |
| Cow position: | chr19:20635645-20635132 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 421 |
| Conread position: | 12-525 |
| Cow position: | chr19:23613420-23613933 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-525 |
| Cow position: | chr19:23613672-23614185 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 230 |
| Conread position: | 12-525 |
| Cow position: | chr19:23614092-23614605 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-525 |
| Cow position: | chr19:23614344-23614857 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 12-530 |
| Cow position: | chr19:23597101-23597619 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 313 |
| Conread position: | 12-532 |
| Cow position: | chr19:23613924-23614443 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 405 |
| Conread position: | 12-607 |
| Cow position: | chr19:23649710-23650312 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 372 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 392, 407 |
| Conread position: | 13-525 |
| Cow position: | chr19:23614261-23614773 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-523 |
| Cow position: | chr19:14940482-14940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 14-525 |
| Cow position: | chr19:14960401-14959892 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 14-525 |
| Cow position: | chr19:23613758-23614269 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-525 |
| Cow position: | chr19:23614430-23614941 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 320 |
| Conread position: | 15-484 |
| Cow position: | chr19:23597188-23597658 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 15-525 |
| Cow position: | chr19:23649797-23650307 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 136 |
| Conread position: | 15-530 |
| Cow position: | chr19:23649545-23650060 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 301 |
| Conread position: | 17-488 |
| Cow position: | chr19:23649967-23650438 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 147 |
| Conread position: | 17-532 |
| Cow position: | chr19:20677440-20677954 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 147 |
| Conread position: | 18-523 |
| Cow position: | chr19:23614518-23615023 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 230 |
| Conread position: | 18-525 |
| Cow position: | chr19:23613846-23614353 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-532 |
| Cow position: | chr19:23649632-23650145 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 308 |
| Conread position: | 26-523 |
| Cow position: | chr19:23649388-23649885 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 26-525 |
| Cow position: | chr19:23613350-23613849 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 79-525 |
| Cow position: | chr19:14939960-14940405 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 17 |
| Conread position: | 80-485 |
| Cow position: | chr19:20677671-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 246 |
| Conread position: | 86-486 |
| Cow position: | chr19:14948488-14948089 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 90-532 |
| Cow position: | chr19:23649284-23649725 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 320, 329 |
| Conread position: | 91-486 |
| Cow position: | chr19:14960158-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 94-486 |
| Cow position: | chr19:23597018-23597407 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 94-519 |
| Cow position: | chr19:14960405-14959982 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 231 |
| Conread position: | 94-525 |
| Cow position: | chr19:43570238-43569807 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 322 |
| Conread position: | 94-604 |
| Cow position: | chr19:23597099-23597616 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 447 |
| Conread position: | 95-518 |
| Cow position: | chr19:20635646-20635223 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 225 |
| Conread position: | 96-489 |
| Cow position: | chr19:14959254-14958867 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 135 |
| Conread position: | 96-530 |
| Cow position: | chr19:43570394-43569970 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 116 |
| Conread position: | 106-604 |
| Cow position: | chr19:20635871-20635382 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 425, 16 |
| Conread position: | 112-486 |
| Cow position: | chr19:23596868-23597239 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 117-523 |
| Cow position: | chr19:20677291-20677694 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 264, 68 |
| Conread position: | 121-485 |
| Cow position: | chr19:14915974-14916337 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 155 |
| Conread position: | 121-523 |
| Cow position: | chr19:20677376-20677778 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 125-523 |
| Cow position: | chr19:14960456-14960062 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 281, 13 |
| Conread position: | 156-607 |
| Cow position: | chr19:20635753-20635295 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 288 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 190-532 |
| Cow position: | chr19:14960477-14960138 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 192-530 |
| Cow position: | chr19:14939988-14940326 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 194-486 |
| Cow position: | chr19:14959650-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 199-486 |
| Cow position: | chr19:20677289-20677573 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 215-485 |
| Cow position: | chr19:14959712-14959444 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 274-484 |
| Cow position: | chr19:20636118-20635911 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 176, 67 |
| Conread position: | 278-528 |
| Cow position: | chr19:23613350-23613600 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.