Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030K08.5 |
| Conread position: | 3-404 |
| Cow position: | chr23:24535816-24535414 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 3-452 |
| Cow position: | chr23:24560577-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-484 |
| Cow position: | chr23:24560661-24560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 331 |
| Conread position: | 4-523 |
| Cow position: | chr23:24547184-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-379 |
| Cow position: | chr23:24626371-24626743 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 320 |
| Conread position: | 5-452 |
| Cow position: | chr23:25626594-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 5-523 |
| Cow position: | chr23:24639447-24639965 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 6-400 |
| Cow position: | chr23:25698508-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 6-466 |
| Cow position: | chr23:24626288-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 6-486 |
| Cow position: | chr23:24522669-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 48 |
| Conread position: | 6-529 |
| Cow position: | chr23:25626430-25626950 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 330 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 6-530 |
| Cow position: | chr23:24639280-24639804 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 318 |
| Conread position: | 6-530 |
| Cow position: | chr23:25626346-25626867 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 92 |
| Conread position: | 11-369 |
| Cow position: | chr23:25660388-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 12-287 |
| Cow position: | chr23:24560400-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 12-355 |
| Cow position: | chr23:25724057-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 12-379 |
| Cow position: | chr23:24639706-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 306, 313 |
| Conread position: | 12-451 |
| Cow position: | chr23:24547092-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 228 |
| Conread position: | 12-525 |
| Cow position: | chr23:24547260-24546747 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-525 |
| Cow position: | chr23:25660221-25660734 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 329 |
| Conread position: | 12-527 |
| Cow position: | chr23:25626100-25626612 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 338 |
| Conread position: | 12-530 |
| Cow position: | chr23:24535975-24535458 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 110 |
| Conread position: | 15-523 |
| Cow position: | chr23:24560733-24560225 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-287 |
| Cow position: | chr23:25626775-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-427 |
| Cow position: | chr23:24522576-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 18-453 |
| Cow position: | chr23:25660311-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 400 |
| Conread position: | 18-486 |
| Cow position: | chr23:24639628-24640097 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 325, 319 |
| Conread position: | 18-523 |
| Cow position: | chr23:24639544-24640049 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 20-484 |
| Cow position: | chr23:25660145-25660610 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 22-526 |
| Cow position: | chr23:25698660-25698156 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 299, 312 |
| Conread position: | 35-378 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 118, 123 |
| Conread position: | 61-462 |
| Cow position: | chr23:25724091-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 385, 11 |
| Conread position: | 71-487 |
| Cow position: | chr23:24536084-24535668 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 80-485 |
| Cow position: | chr23:24639270-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 85-523 |
| Cow position: | chr23:24639191-24639629 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 223, 240 |
| Conread position: | 90-530 |
| Cow position: | chr23:24535981-24535541 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-530 |
| Cow position: | chr23:24560826-24560386 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 235 |
| Conread position: | 94-496 |
| Cow position: | chr23:25626599-25627001 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-523 |
| Cow position: | chr23:25626098-25626527 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 227, 245 |
| Conread position: | 94-524 |
| Cow position: | chr23:24547262-24546832 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-523 |
| Cow position: | chr23:25698502-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 110-523 |
| Cow position: | chr23:24522815-24522407 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 111-530 |
| Cow position: | chr23:24626309-24626728 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 322 |
| Conread position: | 119-486 |
| Cow position: | chr23:25660160-25660527 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 284, 313 |
| Conread position: | 125-523 |
| Cow position: | chr23:24547315-24546917 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 165-484 |
| Cow position: | chr23:25626001-25626320 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 189-523 |
| Cow position: | chr23:24626303-24626637 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 189-525 |
| Cow position: | chr23:25660146-25660482 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 217, 242 |
| Conread position: | 190-523 |
| Cow position: | chr23:24547334-24547001 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 132 |
| Conread position: | 194-530 |
| Cow position: | chr23:24560890-24560554 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-528 |
| Cow position: | chr23:24522814-24522486 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 204-525 |
| Cow position: | chr23:24654043-24654364 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 291, 283 |
| Conread position: | 210-525 |
| Cow position: | chr23:25724111-25723796 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-530 |
| Cow position: | chr23:24626303-24626560 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-525 |
| Cow position: | chr23:24536046-24535798 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 48 |
| Conread position: | 278-527 |
| Cow position: | chr23:24547330-24547081 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 47 |
Show alignments to all cow chromosomes.