Cow genome map

Conread name: Ss1.1-Pig4-TMW8030K08.5

Conread position: 3-382
Cow position: chr25:33127862-33128241 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 70

Conread position: 3-486
Cow position: chr25:34770064-34769581 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 155

Conread position: 4-517
Cow position: chr25:33298540-33299053 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 19

Conread position: 4-524
Cow position: chr25:33299128-33299648 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 320

Conread position: 5-355
Cow position: chr25:23420529-23420879 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 5-516
Cow position: chr25:34447084-34447595 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-523
Cow position: chr25:33157327-33156809 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-525
Cow position: chr25:34433667-34434172 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 318
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 119, 92

Conread position: 5-525
Cow position: chr25:34769978-34769458 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 69

Conread position: 5-530
Cow position: chr25:33157411-33156886 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 427

Conread position: 6-319
Cow position: chr25:34769557-34769244 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 6-394
Cow position: chr25:33305819-33305434 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 237
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 171, 95

Conread position: 6-448
Cow position: chr25:33127781-33128223 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-484
Cow position: chr25:34713929-34714408 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 290
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 73

Conread position: 11-400
Cow position: chr25:22235897-22236286 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 234
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 68

Conread position: 12-285
Cow position: chr25:326992-327265 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 60

Conread position: 12-467
Cow position: chr25:33157236-33156782 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 421

Conread position: 12-475
Cow position: chr25:326650-327119 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 293
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 61

Conread position: 12-482
Cow position: chr25:34769635-34769162 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 58

Conread position: 12-482
Cow position: chr25:36801528-36801994 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 294
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 307, 316

Conread position: 12-484
Cow position: chr25:326734-327213 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 299
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 55, 61

Conread position: 12-484
Cow position: chr25:34447259-34447729 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 239

Conread position: 12-485
Cow position: chr25:33306393-33305926 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 295
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 307, 42

Conread position: 12-494
Cow position: chr25:36800868-36801349 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 297
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 465, 0

Conread position: 12-519
Cow position: chr25:33298800-33299307 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-519
Cow position: chr25:33299220-33299727 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 42

Conread position: 12-523
Cow position: chr25:33144918-33145426 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 120

Conread position: 12-523
Cow position: chr25:36801120-36801619 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 324
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 68, 42

Conread position: 12-524
Cow position: chr25:34769803-34769291 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-526
Cow position: chr25:33298884-33299398 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 69

Conread position: 12-579
Cow position: chr25:33299304-33299873 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 144

Conread position: 13-319
Cow position: chr25:18642185-18641876 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 196
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 62

Conread position: 13-365
Cow position: chr25:33145084-33145436 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 227
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 140, 148

Conread position: 13-523
Cow position: chr25:33298717-33299227 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 65

Conread position: 14-481
Cow position: chr25:33305893-33305431 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 278
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 305, 40

Conread position: 14-524
Cow position: chr25:33298970-33299480 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 40

Conread position: 15-502
Cow position: chr25:34769884-34769397 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 335

Conread position: 16-490
Cow position: chr25:36801448-36801923 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 64

Conread position: 16-523
Cow position: chr25:33127707-33128214 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 38

Conread position: 17-485
Cow position: chr25:36800705-36801173 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 150

Conread position: 17-507
Cow position: chr25:33305972-33305490 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 300
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 217, 27

Conread position: 17-565
Cow position: chr25:34714024-34714575 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 322
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 37

Conread position: 18-483
Cow position: chr25:33305244-33304789 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 286
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 200, 137

Conread position: 18-486
Cow position: chr25:34769713-34769245 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-525
Cow position: chr25:34447181-34447688 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 309

Conread position: 20-538
Cow position: chr25:23420376-23420894 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 139

Conread position: 24-524
Cow position: chr25:36801372-36801872 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 98

Conread position: 24-530
Cow position: chr25:33144846-33145349 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 315
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 372, 192

Conread position: 26-319
Cow position: chr25:366724-367017 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 183
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 226, 233

Conread position: 27-496
Cow position: chr25:36800799-36801268 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 54

Conread position: 72-525
Cow position: chr25:34770163-34769710 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 78-523
Cow position: chr25:33157506-33157061 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 79

Conread position: 79-369
Cow position: chr25:326975-327265 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 63, 78

Conread position: 79-448
Cow position: chr25:33145066-33145435 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 79-523
Cow position: chr25:33157421-33156977 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 79-524
Cow position: chr25:36801343-36801788 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 280
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 257, 263

Conread position: 87-521
Cow position: chr25:34713842-34714277 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 274
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 35

Conread position: 89-406
Cow position: chr25:414796-414485 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 204
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 89-521
Cow position: chr25:33306069-33305643 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 281
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 86, 92

Conread position: 90-489
Cow position: chr25:22235892-22236291 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 247
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 247, 237

Conread position: 90-523
Cow position: chr25:33305421-33304994 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 285
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 312, 15

Conread position: 90-524
Cow position: chr25:36800526-36800960 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 267
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 335, 323

Conread position: 90-525
Cow position: chr25:34447001-34447436 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 245

Conread position: 92-467
Cow position: chr25:34433506-34433877 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 231
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 266, 5

Conread position: 94-315
Cow position: chr25:34433003-34433224 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 63

Conread position: 94-414
Cow position: chr25:18642188-18641865 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 81

Conread position: 94-519
Cow position: chr25:34770057-34769632 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 94-523
Cow position: chr25:23420213-23420627 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 282
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 59, 73

Conread position: 96-537
Cow position: chr25:34713935-34714377 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 271
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 85, 91

Conread position: 102-524
Cow position: chr25:33298470-33298892 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 226

Conread position: 105-530
Cow position: chr25:23420377-23420802 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 111-489
Cow position: chr25:414696-414321 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 232
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 281, 217

Conread position: 111-523
Cow position: chr25:34446938-34447350 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 253
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 122-523
Cow position: chr25:36800642-36801043 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 257
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 199, 206

Conread position: 124-523
Cow position: chr25:346461-346860 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 253
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 173, 178

Conread position: 135-453
Cow position: chr25:326947-327265 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 19

Conread position: 141-519
Cow position: chr25:23420329-23420707 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 186

Conread position: 146-530
Cow position: chr25:34446889-34447273 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 243
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 33, 37

Conread position: 180-379
Cow position: chr25:34433005-34433204 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 141, 145

Conread position: 189-523
Cow position: chr25:33157563-33157229 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 203
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 43

Conread position: 189-523
Cow position: chr25:34732614-34732280 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 212
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 215, 243

Conread position: 190-486
Cow position: chr25:346443-346739 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 192-524
Cow position: chr25:326494-326826 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 209
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 150

Conread position: 193-525
Cow position: chr25:23420228-23420545 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 215
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 56

Conread position: 194-524
Cow position: chr25:366724-367054 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 208
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 213-481
Cow position: chr25:34432954-34433222 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 112

Conread position: 265-522
Cow position: chr25:34433510-34433764 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 141, 97

Show alignments to all cow chromosomes.