Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030K08.5 |
| Conread position: | 3-368 |
| Cow position: | chr28:7758468-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 79 |
| Conread position: | 4-320 |
| Cow position: | chr28:9290394-9290711 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 4-486 |
| Cow position: | chr28:9290149-9290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 295, 50 |
| Conread position: | 4-525 |
| Cow position: | chr28:9298878-9299383 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 398, 117 |
| Conread position: | 5-484 |
| Cow position: | chr28:9253081-9253561 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 5-517 |
| Cow position: | chr28:7757982-7758478 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 300 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 316, 323 |
| Conread position: | 6-487 |
| Cow position: | chr28:34673418-34673899 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 147, 161 |
| Conread position: | 6-491 |
| Cow position: | chr28:9298713-9299195 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 6-528 |
| Cow position: | chr28:34679579-34679067 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 85, 33 |
| Conread position: | 11-298 |
| Cow position: | chr28:7810659-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 11-485 |
| Cow position: | chr28:9253003-9253477 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-287 |
| Cow position: | chr28:9253340-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-368 |
| Cow position: | chr28:9253256-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 309, 313 |
| Conread position: | 12-379 |
| Cow position: | chr28:11333732-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 12-463 |
| Cow position: | chr28:11333984-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 12-466 |
| Cow position: | chr28:7810501-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 40 |
| Conread position: | 12-485 |
| Cow position: | chr28:7810333-7810797 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 12-485 |
| Cow position: | chr28:7810417-7810881 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 12-525 |
| Cow position: | chr28:7757485-7757998 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 481 |
| Conread position: | 12-525 |
| Cow position: | chr28:7757653-7758166 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 12-525 |
| Cow position: | chr28:7757737-7758250 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 232 |
| Conread position: | 12-530 |
| Cow position: | chr28:9289986-9290501 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 337 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 12-530 |
| Cow position: | chr28:11334152-11333634 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 152 |
| Conread position: | 12-532 |
| Cow position: | chr28:7810258-7810759 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 12-587 |
| Cow position: | chr28:7757821-7758397 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 13-442 |
| Cow position: | chr28:9253173-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-485 |
| Cow position: | chr28:7757403-7757874 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 18-483 |
| Cow position: | chr28:9298643-9299104 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 18-519 |
| Cow position: | chr28:7757575-7758076 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 18-523 |
| Cow position: | chr28:34696071-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 23-519 |
| Cow position: | chr28:9299217-9299708 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 24-519 |
| Cow position: | chr28:9252766-9253259 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 127 |
| Conread position: | 26-490 |
| Cow position: | chr28:7758323-7758787 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 281, 295 |
| Conread position: | 72-327 |
| Cow position: | chr28:33210357-33210613 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 72-525 |
| Cow position: | chr28:7757378-7757830 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 78-480 |
| Cow position: | chr28:9298619-9299017 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 83-530 |
| Cow position: | chr28:7758298-7758742 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 385, 12 |
| Conread position: | 94-485 |
| Cow position: | chr28:9290319-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 94-487 |
| Cow position: | chr28:34673422-34673816 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 380, 0 |
| Conread position: | 94-545 |
| Cow position: | chr28:11334154-11333704 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 227, 231 |
| Conread position: | 95-486 |
| Cow position: | chr28:34679574-34679182 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 100-523 |
| Cow position: | chr28:9298556-9298977 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 109-504 |
| Cow position: | chr28:9299219-9299612 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 111-502 |
| Cow position: | chr28:33210228-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 199, 214 |
| Conread position: | 113-519 |
| Cow position: | chr28:7757334-7757740 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 178 |
| Conread position: | 121-486 |
| Cow position: | chr28:34673365-34673730 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 124-464 |
| Cow position: | chr28:34695841-34696181 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 148, 129 |
| Conread position: | 126-519 |
| Cow position: | chr28:9253034-9253427 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 170-525 |
| Cow position: | chr28:11334246-11333891 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 226, 234 |
| Conread position: | 185-519 |
| Cow position: | chr28:9253009-9253343 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 144 |
| Conread position: | 193-532 |
| Cow position: | chr28:34673353-34673691 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 282, 291 |
| Conread position: | 195-530 |
| Cow position: | chr28:33210228-33210563 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 130 |
Show alignments to all cow chromosomes.