Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030K08.5 |
| Conread position: | 1-398 |
| Cow position: | chr8:45201580-45201977 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-530 |
| Cow position: | chr8:45201160-45201689 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-486 |
| Cow position: | chr8:45200827-45201309 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 4-523 |
| Cow position: | chr8:46816274-46816793 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 4-525 |
| Cow position: | chr8:46816610-46817131 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 4-526 |
| Cow position: | chr8:46816106-46816628 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-484 |
| Cow position: | chr8:55580884-55581363 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 114 |
| Conread position: | 6-326 |
| Cow position: | chr8:48406643-48406322 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 160, 148 |
| Conread position: | 6-486 |
| Cow position: | chr8:45201249-45201729 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 116 |
| Conread position: | 6-486 |
| Cow position: | chr8:55581053-55581533 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 6-487 |
| Cow position: | chr8:46816444-46816925 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 6-525 |
| Cow position: | chr8:46816192-46816711 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 6-530 |
| Cow position: | chr8:45201081-45201605 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 322 |
| Conread position: | 6-532 |
| Cow position: | chr8:48407567-48407042 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 12-461 |
| Cow position: | chr8:55581311-55581760 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 12-465 |
| Cow position: | chr8:45201675-45202120 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 12-467 |
| Cow position: | chr8:48407225-48406770 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 12-482 |
| Cow position: | chr8:45201507-45201977 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-487 |
| Cow position: | chr8:46815943-46816421 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 12-502 |
| Cow position: | chr8:55581227-55581717 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 313 |
| Conread position: | 12-519 |
| Cow position: | chr8:45201339-45201846 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 57 |
| Conread position: | 12-523 |
| Cow position: | chr8:48407309-48406798 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 407 |
| Conread position: | 12-523 |
| Cow position: | chr8:48407393-48406882 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 476 |
| Conread position: | 12-525 |
| Cow position: | chr8:45201423-45201936 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 322 |
| Conread position: | 12-525 |
| Cow position: | chr8:48406889-48406376 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 128, 171 |
| Conread position: | 12-532 |
| Cow position: | chr8:48407141-48406622 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 400 |
| Conread position: | 12-532 |
| Cow position: | chr8:48407477-48406958 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 136 |
| Conread position: | 13-523 |
| Cow position: | chr8:55580808-55581318 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-525 |
| Cow position: | chr8:55580976-55581488 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 13-534 |
| Cow position: | chr8:55581144-55581665 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 14-439 |
| Cow position: | chr8:6958009-6957587 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 14-484 |
| Cow position: | chr8:45201005-45201475 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 14-487 |
| Cow position: | chr8:46816872-46817346 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 14-525 |
| Cow position: | chr8:46816368-46816879 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 14-528 |
| Cow position: | chr8:46816788-46817302 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 17-403 |
| Cow position: | chr8:46816959-46817345 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 17-488 |
| Cow position: | chr8:46816035-46816506 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 17-525 |
| Cow position: | chr8:46816539-46817047 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 26-525 |
| Cow position: | chr8:55580736-55581236 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 62-603 |
| Cow position: | chr8:45200801-45201349 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 87-486 |
| Cow position: | chr8:45200995-45201393 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 87-530 |
| Cow position: | chr8:46815934-46816380 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 400 |
| Conread position: | 93-532 |
| Cow position: | chr8:48407648-48407210 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 96-523 |
| Cow position: | chr8:46815700-46816121 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 240, 85 |
| Conread position: | 98-480 |
| Cow position: | chr8:6958009-6957628 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 292, 226 |
| Conread position: | 102-530 |
| Cow position: | chr8:48407555-48407127 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 322 |
| Conread position: | 109-484 |
| Cow position: | chr8:48406707-48406333 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 135-478 |
| Cow position: | chr8:6958056-6957714 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 270, 283 |
| Conread position: | 216-444 |
| Cow position: | chr8:6958059-6957831 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 105, 109 |
| Conread position: | 260-523 |
| Cow position: | chr8:48407649-48407386 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.