Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030K08.5 |
| Conread position: | 1-388 |
| Cow position: | chrX:25324605-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 1-401 |
| Cow position: | chrX:12627663-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 3-524 |
| Cow position: | chrX:25309950-25310471 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 4-484 |
| Cow position: | chrX:12627583-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 70 |
| Conread position: | 4-523 |
| Cow position: | chrX:25325106-25324587 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 4-525 |
| Cow position: | chrX:25325274-25324753 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-385 |
| Cow position: | chrX:25310205-25310584 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 6-387 |
| Cow position: | chrX:29045029-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 6-463 |
| Cow position: | chrX:25310121-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 294 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 6-486 |
| Cow position: | chrX:25309785-25310265 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-486 |
| Cow position: | chrX:25325356-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-523 |
| Cow position: | chrX:12627334-12627849 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 6-523 |
| Cow position: | chrX:25325776-25325259 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 90 |
| Conread position: | 6-525 |
| Cow position: | chrX:25325440-25324921 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 72 |
| Conread position: | 11-323 |
| Cow position: | chrX:29045759-29045447 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-484 |
| Cow position: | chrX:25309706-25310180 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 317 |
| Conread position: | 11-525 |
| Cow position: | chrX:25325603-25325089 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 12-453 |
| Cow position: | chrX:25324678-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 12-465 |
| Cow position: | chrX:29045107-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-486 |
| Cow position: | chrX:29045191-29044717 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 238 |
| Conread position: | 12-487 |
| Cow position: | chrX:25324762-25324287 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-519 |
| Cow position: | chrX:25310043-25310550 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 12-525 |
| Cow position: | chrX:25325182-25324669 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 12-525 |
| Cow position: | chrX:29045674-29045182 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 14-484 |
| Cow position: | chrX:25325516-25325045 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 14-486 |
| Cow position: | chrX:25309877-25310349 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 232 |
| Conread position: | 14-525 |
| Cow position: | chrX:25324928-25324417 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 504 |
| Conread position: | 15-416 |
| Cow position: | chrX:13826876-13826473 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 15-428 |
| Cow position: | chrX:14181318-14180905 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 17-523 |
| Cow position: | chrX:25324841-25324335 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-485 |
| Cow position: | chrX:14181483-14181016 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 89-525 |
| Cow position: | chrX:25325777-25325341 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 90-484 |
| Cow position: | chrX:25309701-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-525 |
| Cow position: | chrX:29045193-29044762 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 96-481 |
| Cow position: | chrX:29045758-29045373 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 226, 232 |
| Conread position: | 98-525 |
| Cow position: | chrX:29045273-29044846 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 230 |
| Conread position: | 102-486 |
| Cow position: | chrX:12627511-12627896 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 137 |
| Conread position: | 126-512 |
| Cow position: | chrX:13826933-13826547 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 141-484 |
| Cow position: | chrX:25309668-25310012 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 156-530 |
| Cow position: | chrX:25325878-25325504 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 180-503 |
| Cow position: | chrX:29045758-29045435 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 180-525 |
| Cow position: | chrX:29045356-29045014 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 226, 25 |
| Conread position: | 204-534 |
| Cow position: | chrX:12627280-12627609 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 133 |
| Conread position: | 264-519 |
| Cow position: | chrX:25309707-25309962 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 268-525 |
| Cow position: | chrX:29045838-29045581 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.