Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031C17.3 |
| Conread position: | 3-281 |
| Cow position: | chrX:16893720-16893455 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 4-283 |
| Cow position: | chrX:1742812-1743080 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 171, 81 |
| Conread position: | 4-285 |
| Cow position: | chrX:40315981-40315707 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 7-187 |
| Cow position: | chrX:25187760-25187577 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 7-298 |
| Cow position: | chrX:28847620-28847932 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 107, 294 |
| Conread position: | 14-298 |
| Cow position: | chrX:3513163-3513436 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 89 |
| Conread position: | 18-285 |
| Cow position: | chrX:29815918-29815667 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 213, 45 |
| Conread position: | 37-290 |
| Cow position: | chrX:34767703-34767950 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 48-282 |
| Cow position: | chrX:34635447-34635675 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 172, 67 |
| Conread position: | 48-285 |
| Cow position: | chrX:832380-832157 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 176, 53 |
| Conread position: | 48-296 |
| Cow position: | chrX:19045989-19046219 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 165, 68 |
| Conread position: | 49-293 |
| Cow position: | chrX:19738229-19737983 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 45, 185 |
| Conread position: | 54-296 |
| Cow position: | chrX:27529676-27529444 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 169, 31 |
| Conread position: | 55-298 |
| Cow position: | chrX:25180501-25180263 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 160, 61 |
| Conread position: | 56-285 |
| Cow position: | chrX:3450728-3450951 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 66-295 |
| Cow position: | chrX:35981753-35981535 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 19 |
| Conread position: | 69-228 |
| Cow position: | chrX:38708899-38708739 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 89-283 |
| Cow position: | chrX:6999637-6999449 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 127-295 |
| Cow position: | chrX:38741142-38740975 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 86, 134 |
| Conread position: | 131-285 |
| Cow position: | chrX:33159069-33158913 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 131-285 |
| Cow position: | chrX:38674906-38674750 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 140-285 |
| Cow position: | chrX:10062239-10062093 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 142-298 |
| Cow position: | chrX:37251477-37251317 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 152-283 |
| Cow position: | chrX:29145481-29145349 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.