Cow genome map

Conread name: Ss1.1-Pig4-TMW8031H19.3

Conread position: 242-644
Cow position: chr20:7848283-7847879 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 266
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 74, 24

Conread position: 315-727
Cow position: chr20:6632115-6631717 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 281
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 189, 44

Conread position: 347-640
Cow position: chr20:12300166-12300462 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 146, 16

Conread position: 347-707
Cow position: chr20:1049455-1049813 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 232
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 44

Conread position: 358-522
Cow position: chr20:24174956-24174786 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 359-640
Cow position: chr20:23642655-23642944 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 208

Conread position: 359-728
Cow position: chr20:3399478-3399127 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 78

Conread position: 359-729
Cow position: chr20:2781638-2782002 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 256
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 10

Conread position: 361-725
Cow position: chr20:34312346-34311971 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 250
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 9

Conread position: 361-732
Cow position: chr20:8719297-8718921 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 197

Conread position: 362-506
Cow position: chr20:35150699-35150546 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 369-507
Cow position: chr20:7768083-7767944 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 370-732
Cow position: chr20:1330121-1330476 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 79, 19

Conread position: 370-732
Cow position: chr20:5118954-5119320 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 20

Conread position: 372-694
Cow position: chr20:22651651-22651339 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 20

Conread position: 372-717
Cow position: chr20:3388392-3388735 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 38

Conread position: 373-698
Cow position: chr20:7620925-7621252 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 210
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 35

Conread position: 377-724
Cow position: chr20:3446779-3446422 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 14

Conread position: 380-640
Cow position: chr20:38916379-38916639 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 110, 155

Conread position: 381-720
Cow position: chr20:5891701-5892044 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 25, 13

Conread position: 383-604
Cow position: chr20:12358448-12358671 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 126, 153

Conread position: 383-703
Cow position: chr20:30352175-30352481 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 263, 37

Conread position: 384-732
Cow position: chr20:13064229-13063899 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 262, 18

Conread position: 387-592
Cow position: chr20:22912929-22913132 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 104, 148

Conread position: 387-674
Cow position: chr20:6007172-6007459 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 23

Conread position: 387-723
Cow position: chr20:22930092-22930430 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 223
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 115, 12

Conread position: 387-727
Cow position: chr20:12140904-12141245 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 247
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 56, 158

Conread position: 387-727
Cow position: chr20:30182232-30181899 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 105, 146

Conread position: 387-729
Cow position: chr20:21912541-21912208 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 234
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 161, 77

Conread position: 387-732
Cow position: chr20:3160441-3160094 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 21, 59

Conread position: 387-732
Cow position: chr20:4853326-4853672 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 149

Conread position: 387-732
Cow position: chr20:23331777-23332120 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 231
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 89, 127

Conread position: 388-598
Cow position: chr20:21387891-21387687 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 63

Conread position: 388-732
Cow position: chr20:41462794-41462454 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 232
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 119, 163

Conread position: 390-722
Cow position: chr20:26786689-26787026 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 75, 32

Conread position: 390-724
Cow position: chr20:12195904-12196241 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 390-726
Cow position: chr20:150627-150301 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 288, 31

Conread position: 390-727
Cow position: chr20:1513928-1514280 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 159

Conread position: 390-732
Cow position: chr20:22953275-22953623 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 28

Conread position: 390-732
Cow position: chr20:34938675-34939010 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 221
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 256, 80

Conread position: 392-648
Cow position: chr20:24569659-24569405 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 141

Conread position: 392-727
Cow position: chr20:13710465-13710802 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 144

Conread position: 396-729
Cow position: chr20:3798519-3798847 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 108, 140

Conread position: 400-728
Cow position: chr20:2177980-2178311 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 75, 67

Conread position: 401-656
Cow position: chr20:29396613-29396366 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 48

Conread position: 404-661
Cow position: chr20:24099624-24099362 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 63

Conread position: 404-725
Cow position: chr20:8476671-8476355 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 66

Conread position: 405-732
Cow position: chr20:24697681-24697364 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 238, 115

Conread position: 407-714
Cow position: chr20:5903146-5903438 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 260, 27

Conread position: 411-725
Cow position: chr20:26402054-26402370 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 94, 118

Conread position: 420-719
Cow position: chr20:2946494-2946194 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 199
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 35

Conread position: 422-732
Cow position: chr20:27195893-27195580 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 198
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 171

Conread position: 435-732
Cow position: chr20:13672868-13673163 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 55, 103

Conread position: 446-729
Cow position: chr20:5782857-5782564 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 102

Conread position: 453-732
Cow position: chr20:35462459-35462178 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 59

Conread position: 464-732
Cow position: chr20:8662003-8661728 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 76

Conread position: 468-717
Cow position: chr20:17698621-17698371 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 10

Conread position: 481-732
Cow position: chr20:701711-701964 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 27, 59

Conread position: 490-729
Cow position: chr20:17685536-17685301 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 160
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 85, 25

Conread position: 503-729
Cow position: chr20:5726469-5726243 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 30

Conread position: 503-732
Cow position: chr20:29078413-29078641 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 29

Conread position: 505-729
Cow position: chr20:23142586-23142808 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 14

Conread position: 507-728
Cow position: chr20:20068360-20068145 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 508-732
Cow position: chr20:8596878-8596657 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 138, 37

Conread position: 523-728
Cow position: chr20:35010648-35010853 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 127, 10

Conread position: 529-730
Cow position: chr20:5676464-5676262 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 110, 0

Conread position: 546-728
Cow position: chr20:9269660-9269482 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 100, 30

Conread position: 549-732
Cow position: chr20:35149688-35149509 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 103, 56

Conread position: 558-732
Cow position: chr20:17930093-17929917 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 115

Conread position: 562-726
Cow position: chr20:6849540-6849701 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 566-725
Cow position: chr20:8092930-8093094 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 571-730
Cow position: chr20:27441829-27441989 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 113
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 580-732
Cow position: chr20:12835291-12835443 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 12

Conread position: 581-723
Cow position: chr20:922762-922902 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 65, 48

Conread position: 582-723
Cow position: chr20:4619884-4620023 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 57, 25

Conread position: 582-726
Cow position: chr20:34840446-34840592 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 585-721
Cow position: chr20:26343727-26343589 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 621-732
Cow position: chr20:5787320-5787207 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 623-723
Cow position: chr20:7397235-7397134 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.