Cow genome map

Conread name: Ss1.1-Pig4-TMW8031H19.3

Conread position: 318-703
Cow position: chr28:12625315-12625700 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 257
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 64

Conread position: 325-729
Cow position: chr28:4825925-4826321 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 6

Conread position: 332-700
Cow position: chr28:24482355-24482001 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 245
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 25, 68

Conread position: 346-732
Cow position: chr28:34574233-34573848 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 269
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 31, 13

Conread position: 349-729
Cow position: chr28:1907242-1906860 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 261
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 22, 101

Conread position: 357-729
Cow position: chr28:33769376-33769006 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 34, 81

Conread position: 359-726
Cow position: chr28:26595868-26595512 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 25, 62

Conread position: 359-730
Cow position: chr28:20673858-20673491 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 264
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 35, 119

Conread position: 364-729
Cow position: chr28:22359693-22359318 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 73

Conread position: 365-617
Cow position: chr28:18962760-18963011 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 32

Conread position: 365-721
Cow position: chr28:4186471-4186118 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 12, 93

Conread position: 365-732
Cow position: chr28:19360102-19360479 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 137, 194

Conread position: 365-732
Cow position: chr28:22610715-22610347 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 238
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 19

Conread position: 365-732
Cow position: chr28:22645927-22645577 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 135, 26

Conread position: 366-701
Cow position: chr28:17501297-17501619 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 42

Conread position: 366-732
Cow position: chr28:607224-606862 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 243
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 29

Conread position: 367-726
Cow position: chr28:23904344-23903986 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 27

Conread position: 370-673
Cow position: chr28:19190435-19190132 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 10

Conread position: 371-642
Cow position: chr28:34235024-34235306 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 50

Conread position: 371-688
Cow position: chr28:16484396-16484077 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 117, 23

Conread position: 371-725
Cow position: chr28:21537122-21537462 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 233
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 33

Conread position: 371-729
Cow position: chr28:527616-527268 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 250
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 18

Conread position: 371-729
Cow position: chr28:4136168-4136515 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 120, 165

Conread position: 372-732
Cow position: chr28:23136313-23136675 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 22, 101

Conread position: 372-732
Cow position: chr28:34635900-34635548 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 117, 48

Conread position: 373-732
Cow position: chr28:19373009-19373368 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 236
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 144

Conread position: 374-720
Cow position: chr28:34562901-34563238 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 229
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 16

Conread position: 374-724
Cow position: chr28:11078712-11078371 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 224
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 47

Conread position: 374-724
Cow position: chr28:23126211-23126560 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 47

Conread position: 374-732
Cow position: chr28:20362568-20362206 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 249
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 98

Conread position: 375-732
Cow position: chr28:34663059-34663404 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 70, 19

Conread position: 377-718
Cow position: chr28:1571449-1571107 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 229
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 149, 135

Conread position: 377-732
Cow position: chr28:20206750-20206393 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 239
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 14

Conread position: 377-732
Cow position: chr28:25138835-25139181 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 242
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 127, 6

Conread position: 382-730
Cow position: chr28:31655075-31654740 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 111, 87

Conread position: 383-721
Cow position: chr28:27679487-27679142 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 154

Conread position: 383-728
Cow position: chr28:8615330-8615667 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 126, 103

Conread position: 383-728
Cow position: chr28:22270470-22270119 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 153

Conread position: 383-732
Cow position: chr28:3733556-3733217 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 235
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 223, 12

Conread position: 383-732
Cow position: chr28:4024102-4023763 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 37

Conread position: 383-732
Cow position: chr28:9616570-9616223 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 244
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 121, 16

Conread position: 383-732
Cow position: chr28:19340239-19340580 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 240
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 107, 24

Conread position: 384-721
Cow position: chr28:23291319-23291662 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 110, 7

Conread position: 384-728
Cow position: chr28:4573774-4573424 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 105, 7

Conread position: 387-603
Cow position: chr28:27160308-27160520 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 138, 15

Conread position: 387-645
Cow position: chr28:25256965-25256708 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 122, 33

Conread position: 387-718
Cow position: chr28:843668-843987 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 105, 155

Conread position: 387-725
Cow position: chr28:24305838-24306164 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 117, 40

Conread position: 387-729
Cow position: chr28:23020513-23020830 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 32

Conread position: 387-732
Cow position: chr28:676502-676842 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 148, 33

Conread position: 387-732
Cow position: chr28:5108557-5108893 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 167, 22

Conread position: 387-732
Cow position: chr28:8802387-8802727 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 92

Conread position: 387-732
Cow position: chr28:9126086-9126427 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 15

Conread position: 387-732
Cow position: chr28:29123019-29123343 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 121, 33

Conread position: 388-723
Cow position: chr28:11601639-11601973 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 112, 24

Conread position: 390-727
Cow position: chr28:26231909-26232254 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 119, 142

Conread position: 390-732
Cow position: chr28:7560600-7560254 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 75

Conread position: 390-732
Cow position: chr28:13177615-13177955 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 34, 82

Conread position: 391-700
Cow position: chr28:20148158-20147845 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 27, 5

Conread position: 391-714
Cow position: chr28:22135360-22135038 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 105, 139

Conread position: 391-726
Cow position: chr28:27259606-27259944 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 41, 147

Conread position: 396-725
Cow position: chr28:17207393-17207069 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 92, 37

Conread position: 396-732
Cow position: chr28:4639245-4639579 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 237
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 100, 140

Conread position: 398-644
Cow position: chr28:22613096-22612849 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 189, 78

Conread position: 400-726
Cow position: chr28:26620993-26621318 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 145, 70

Conread position: 405-705
Cow position: chr28:16559173-16558871 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 206
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 97, 48

Conread position: 405-707
Cow position: chr28:19295916-19296220 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 102, 91

Conread position: 405-729
Cow position: chr28:16868147-16868445 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 213, 36

Conread position: 410-693
Cow position: chr28:26596166-26595880 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 80, 47

Conread position: 435-664
Cow position: chr28:5866560-5866326 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 140

Conread position: 436-732
Cow position: chr28:2168422-2168724 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 195
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 22

Conread position: 437-732
Cow position: chr28:2993146-2993431 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 201
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 71

Conread position: 441-716
Cow position: chr28:16769639-16769358 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 80, 103

Conread position: 445-729
Cow position: chr28:20710831-20710554 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 75, 20

Conread position: 478-732
Cow position: chr28:11857541-11857289 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 28

Conread position: 503-712
Cow position: chr28:13656609-13656815 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 504-726
Cow position: chr28:24215873-24215654 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 61, 12

Conread position: 505-732
Cow position: chr28:34880342-34880563 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 141, 26

Conread position: 506-732
Cow position: chr28:2826254-2826026 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 140

Conread position: 507-732
Cow position: chr28:24298095-24298320 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 140, 45

Conread position: 529-726
Cow position: chr28:23111897-23111703 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 116, 11

Conread position: 541-724
Cow position: chr28:23688418-23688600 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 104, 16

Conread position: 541-732
Cow position: chr28:26983695-26983889 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 67

Conread position: 543-729
Cow position: chr28:23918874-23919058 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 118

Conread position: 546-729
Cow position: chr28:10867854-10867675 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 100, 51

Conread position: 546-731
Cow position: chr28:25959466-25959281 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 11

Conread position: 546-732
Cow position: chr28:5063998-5063812 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 6

Conread position: 546-732
Cow position: chr28:20374672-20374485 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 62

Conread position: 547-732
Cow position: chr28:7603221-7603407 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 548-716
Cow position: chr28:4441422-4441254 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 19

Conread position: 553-732
Cow position: chr28:26392571-26392391 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 555-725
Cow position: chr28:32278277-32278108 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 74

Conread position: 557-730
Cow position: chr28:20899062-20899233 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 110

Conread position: 557-730
Cow position: chr28:28505459-28505281 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 143

Conread position: 564-732
Cow position: chr28:20772654-20772486 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 81, 117

Conread position: 566-731
Cow position: chr28:27130299-27130465 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 569-728
Cow position: chr28:13179312-13179154 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 77, 89

Conread position: 571-732
Cow position: chr28:32633259-32633422 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 572-732
Cow position: chr28:27310397-27310557 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 94

Conread position: 576-724
Cow position: chr28:25942253-25942105 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 78

Conread position: 576-732
Cow position: chr28:14925498-14925657 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 145

Conread position: 586-725
Cow position: chr28:10602186-10602047 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 109

Conread position: 612-732
Cow position: chr28:88928-88804 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 613-732
Cow position: chr28:1287945-1288065 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 621-732
Cow position: chr28:11584748-11584860 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 60

Show alignments to all cow chromosomes.