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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8031H19.3
        

               
Conread position:
               
334-714
               

               
Cow position:
               
chrX:11908485-11908100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
340-687
               

               
Cow position:
               
chrX:36270388-36270056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
345-724
               

               
Cow position:
               
chrX:22075748-22076131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
347-725
               

               
Cow position:
               
chrX:27240894-27240528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
348-728
               

               
Cow position:
               
chrX:37106340-37105960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
348-729
               

               
Cow position:
               
chrX:19867277-19866912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
349-672
               

               
Cow position:
               
chrX:39855352-39855043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
154, 8
               

               
Conread position:
               
349-732
               

               
Cow position:
               
chrX:42054508-42054894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
350-728
               

               
Cow position:
               
chrX:33672928-33672547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
350-729
               

               
Cow position:
               
chrX:27210961-27210592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
352-717
               

               
Cow position:
               
chrX:20700868-20701222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
353-723
               

               
Cow position:
               
chrX:11528944-11529314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
353-725
               

               
Cow position:
               
chrX:29024615-29024239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 179
               

               
Conread position:
               
356-726
               

               
Cow position:
               
chrX:489249-488882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
356-732
               

               
Cow position:
               
chrX:39462926-39463299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
357-724
               

               
Cow position:
               
chrX:22278278-22278644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
275, 25
               

               
Conread position:
               
357-732
               

               
Cow position:
               
chrX:20655042-20654664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
358-694
               

               
Cow position:
               
chrX:25046490-25046148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
359-727
               

               
Cow position:
               
chrX:19320724-19320376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
359-728
               

               
Cow position:
               
chrX:14297178-14297558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
359-728
               

               
Cow position:
               
chrX:26288525-26288896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
359-732
               

               
Cow position:
               
chrX:11375866-11376226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
360-727
               

               
Cow position:
               
chrX:5565675-5566032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
29, 156
               

               
Conread position:
               
360-732
               

               
Cow position:
               
chrX:11904172-11904542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
361-640
               

               
Cow position:
               
chrX:11480393-11480684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
362-690
               

               
Cow position:
               
chrX:19510150-19509816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
362-724
               

               
Cow position:
               
chrX:46039706-46040063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
365-603
               

               
Cow position:
               
chrX:32803374-32803614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
365-688
               

               
Cow position:
               
chrX:25395792-25396109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
365-701
               

               
Cow position:
               
chrX:18828497-18828168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
365-732
               

               
Cow position:
               
chrX:22136116-22136472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
365-732
               

               
Cow position:
               
chrX:38705689-38705328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
366-725
               

               
Cow position:
               
chrX:16060087-16060443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
366-732
               

               
Cow position:
               
chrX:25924392-25924754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
367-718
               

               
Cow position:
               
chrX:29871298-29871646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
367-725
               

               
Cow position:
               
chrX:23192221-23192584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
368-725
               

               
Cow position:
               
chrX:23485328-23484983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
369-507
               

               
Cow position:
               
chrX:43646497-43646638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 130
               

               
Conread position:
               
370-723
               

               
Cow position:
               
chrX:33837722-33837376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
371-701
               

               
Cow position:
               
chrX:29685483-29685151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
371-722
               

               
Cow position:
               
chrX:29315857-29315498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
20, 173
               

               
Conread position:
               
371-724
               

               
Cow position:
               
chrX:117087-117442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
371-725
               

               
Cow position:
               
chrX:508021-508364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
371-725
               

               
Cow position:
               
chrX:24005688-24006037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
371-728
               

               
Cow position:
               
chrX:48771946-48771601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
371-732
               

               
Cow position:
               
chrX:18770037-18769683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
372-664
               

               
Cow position:
               
chrX:822511-822802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
372-732
               

               
Cow position:
               
chrX:18793857-18794219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
374-718
               

               
Cow position:
               
chrX:1394758-1394411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
374-723
               

               
Cow position:
               
chrX:19649121-19649473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
374-724
               

               
Cow position:
               
chrX:10904532-10904869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
374-724
               

               
Cow position:
               
chrX:26176557-26176905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
374-725
               

               
Cow position:
               
chrX:23520295-23520642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
374-725
               

               
Cow position:
               
chrX:27418846-27419192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
374-730
               

               
Cow position:
               
chrX:17562901-17563253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
374-730
               

               
Cow position:
               
chrX:39288027-39288383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
374-732
               

               
Cow position:
               
chrX:40254312-40253963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
269, 17
               

               
Conread position:
               
376-697
               

               
Cow position:
               
chrX:37906128-37905809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
378-716
               

               
Cow position:
               
chrX:21663914-21663572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
378-724
               

               
Cow position:
               
chrX:19807857-19807512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
379-726
               

               
Cow position:
               
chrX:20541759-20541415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
382-732
               

               
Cow position:
               
chrX:26968249-26967905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
45, 68
               

               
Conread position:
               
383-723
               

               
Cow position:
               
chrX:20711312-20710981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
126, 56
               

               
Conread position:
               
383-725
               

               
Cow position:
               
chrX:5507807-5507464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 12
               

               
Conread position:
               
383-725
               

               
Cow position:
               
chrX:19741389-19741711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
383-725
               

               
Cow position:
               
chrX:38826256-38826591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 164
               

               
Conread position:
               
383-732
               

               
Cow position:
               
chrX:12101918-12102265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
384-726
               

               
Cow position:
               
chrX:4415958-4415630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
384-732
               

               
Cow position:
               
chrX:25151318-25150978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
385-693
               

               
Cow position:
               
chrX:2462600-2462891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
385-732
               

               
Cow position:
               
chrX:20543781-20544120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
257, 79
               

               
Conread position:
               
386-717
               

               
Cow position:
               
chrX:40366047-40365733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
387-628
               

               
Cow position:
               
chrX:35879436-35879676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
387-639
               

               
Cow position:
               
chrX:39769905-39769647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
387-644
               

               
Cow position:
               
chrX:29027552-29027806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
122, 153
               

               
Conread position:
               
387-645
               

               
Cow position:
               
chrX:3930159-3929902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 80
               

               
Conread position:
               
387-713
               

               
Cow position:
               
chrX:26610373-26610041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 160
               

               
Conread position:
               
387-718
               

               
Cow position:
               
chrX:5666710-5667039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
387-719
               

               
Cow position:
               
chrX:28081127-28080803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
255, 78
               

               
Conread position:
               
387-724
               

               
Cow position:
               
chrX:18405336-18405666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
387-724
               

               
Cow position:
               
chrX:26845638-26845308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
387-725
               

               
Cow position:
               
chrX:17281863-17282199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
387-726
               

               
Cow position:
               
chrX:36859996-36859655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
387-727
               

               
Cow position:
               
chrX:39187236-39187578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
387-730
               

               
Cow position:
               
chrX:36295237-36294914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
259, 82
               

               
Conread position:
               
387-732
               

               
Cow position:
               
chrX:8926828-8926501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 65
               

               
Conread position:
               
387-732
               

               
Cow position:
               
chrX:31259932-31260272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 118
               

               
Conread position:
               
387-732
               

               
Cow position:
               
chrX:35566244-35566600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
107, 157
               

               
Conread position:
               
387-732
               

               
Cow position:
               
chrX:40727401-40727063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
258, 71
               

               
Conread position:
               
388-640
               

               
Cow position:
               
chrX:46171268-46171517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
389-728
               

               
Cow position:
               
chrX:37128962-37128635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
263, 31
               

               
Conread position:
               
389-732
               

               
Cow position:
               
chrX:37411904-37411569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 123
               

               
Conread position:
               
390-722
               

               
Cow position:
               
chrX:46055734-46055395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 166
               

               
Conread position:
               
390-724
               

               
Cow position:
               
chrX:17485612-17485935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
256, 79
               

               
Conread position:
               
390-724
               

               
Cow position:
               
chrX:23927047-23927381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
390-732
               

               
Cow position:
               
chrX:12172834-12173174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
390-732
               

               
Cow position:
               
chrX:23081410-23081076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
104, 28
               

               
Conread position:
               
390-732
               

               
Cow position:
               
chrX:37949904-37949559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 149
               

               
Conread position:
               
392-729
               

               
Cow position:
               
chrX:41702037-41701702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
392-729
               

               
Cow position:
               
chrX:43788741-43789072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 107
               

               
Conread position:
               
394-725
               

               
Cow position:
               
chrX:23514360-23514681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
252, 28
               

               
Conread position:
               
394-729
               

               
Cow position:
               
chrX:10455886-10455556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
395-603
               

               
Cow position:
               
chrX:28290507-28290296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
395-725
               

               
Cow position:
               
chrX:39857990-39858306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
250, 105
               

               
Conread position:
               
396-711
               

               
Cow position:
               
chrX:14316638-14316325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
397-726
               

               
Cow position:
               
chrX:20178139-20178448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
102, 140
               

               
Conread position:
               
400-728
               

               
Cow position:
               
chrX:17617226-17617534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
402-723
               

               
Cow position:
               
chrX:36291547-36291878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 123
               

               
Conread position:
               
402-732
               

               
Cow position:
               
chrX:7109026-7108701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
404-732
               

               
Cow position:
               
chrX:38390713-38391037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
405-694
               

               
Cow position:
               
chrX:23683291-23683003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
407-732
               

               
Cow position:
               
chrX:337740-337417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 121
               

               
Conread position:
               
407-732
               

               
Cow position:
               
chrX:409888-409569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
408-702
               

               
Cow position:
               
chrX:39315778-39316067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 92
               

               
Conread position:
               
408-713
               

               
Cow position:
               
chrX:25191512-25191212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
98, 61
               

               
Conread position:
               
408-716
               

               
Cow position:
               
chrX:42262442-42262751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 127
               

               
Conread position:
               
408-722
               

               
Cow position:
               
chrX:41818317-41818623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
412-722
               

               
Cow position:
               
chrX:40517677-40517373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 57
               

               
Conread position:
               
413-724
               

               
Cow position:
               
chrX:23268089-23268394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 71
               

               
Conread position:
               
413-725
               

               
Cow position:
               
chrX:33736750-33736429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 130
               

               
Conread position:
               
413-732
               

               
Cow position:
               
chrX:31839609-31839292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
414-732
               

               
Cow position:
               
chrX:10522225-10521908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
419-628
               

               
Cow position:
               
chrX:10846977-10847192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 101
               

               
Conread position:
               
419-729
               

               
Cow position:
               
chrX:42198725-42198409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
424-722
               

               
Cow position:
               
chrX:47290379-47290686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
427-728
               

               
Cow position:
               
chrX:33004344-33004043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
433-732
               

               
Cow position:
               
chrX:37231736-37231443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
213, 37
               

               
Conread position:
               
434-703
               

               
Cow position:
               
chrX:28839027-28838751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
434-723
               

               
Cow position:
               
chrX:43799970-43800256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 135
               

               
Conread position:
               
435-732
               

               
Cow position:
               
chrX:37454240-37453944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
74, 46
               

               
Conread position:
               
436-713
               

               
Cow position:
               
chrX:26276722-26276991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
436-723
               

               
Cow position:
               
chrX:18459371-18459666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
436-732
               

               
Cow position:
               
chrX:33964321-33964627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
437-729
               

               
Cow position:
               
chrX:11857760-11858049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
439-726
               

               
Cow position:
               
chrX:15987763-15988046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
455-725
               

               
Cow position:
               
chrX:29160882-29160610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 199
               

               
Conread position:
               
458-724
               

               
Cow position:
               
chrX:30150674-30150938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
459-694
               

               
Cow position:
               
chrX:23547602-23547841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
462-732
               

               
Cow position:
               
chrX:19636955-19636693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
470-726
               

               
Cow position:
               
chrX:31805156-31804898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
473-732
               

               
Cow position:
               
chrX:28665930-28666187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
474-724
               

               
Cow position:
               
chrX:31777387-31777643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
474-729
               

               
Cow position:
               
chrX:5111372-5111632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
478-726
               

               
Cow position:
               
chrX:41305597-41305844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
480-729
               

               
Cow position:
               
chrX:41755237-41754991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
480-732
               

               
Cow position:
               
chrX:9347173-9346924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
165, 49
               

               
Conread position:
               
485-732
               

               
Cow position:
               
chrX:18896388-18896637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
486-726
               

               
Cow position:
               
chrX:27768268-27768513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
492-729
               

               
Cow position:
               
chrX:7103902-7103673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
503-724
               

               
Cow position:
               
chrX:44147081-44147298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
146, 30
               

               
Conread position:
               
503-725
               

               
Cow position:
               
chrX:22962816-22963039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
503-727
               

               
Cow position:
               
chrX:16354344-16354560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
503-729
               

               
Cow position:
               
chrX:8702966-8703190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
503-729
               

               
Cow position:
               
chrX:25199417-25199199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
142, 26
               

               
Conread position:
               
503-732
               

               
Cow position:
               
chrX:5454704-5454927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
143, 35
               

               
Conread position:
               
503-732
               

               
Cow position:
               
chrX:5909490-5909714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
503-732
               

               
Cow position:
               
chrX:9404127-9403900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
503-732
               

               
Cow position:
               
chrX:12852499-12852726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
504-718
               

               
Cow position:
               
chrX:16846886-16847095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
509-732
               

               
Cow position:
               
chrX:6629707-6629478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
511-732
               

               
Cow position:
               
chrX:23932237-23932456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
512-732
               

               
Cow position:
               
chrX:26878667-26878450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
523-726
               

               
Cow position:
               
chrX:27950371-27950168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
527-718
               

               
Cow position:
               
chrX:20859706-20859516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
530-723
               

               
Cow position:
               
chrX:24888151-24888342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
533-724
               

               
Cow position:
               
chrX:37038327-37038140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
535-684
               

               
Cow position:
               
chrX:20782358-20782507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
535-732
               

               
Cow position:
               
chrX:23876136-23876335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
538-725
               

               
Cow position:
               
chrX:27771103-27771292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
541-724
               

               
Cow position:
               
chrX:25301781-25301961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
541-724
               

               
Cow position:
               
chrX:37454997-37454819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
543-723
               

               
Cow position:
               
chrX:7809029-7809209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 174
               

               
Conread position:
               
546-728
               

               
Cow position:
               
chrX:6514316-6514500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
546-729
               

               
Cow position:
               
chrX:36238650-36238465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
546-730
               

               
Cow position:
               
chrX:16410851-16410664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
547-696
               

               
Cow position:
               
chrX:9841026-9840878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
547-722
               

               
Cow position:
               
chrX:41541202-41541381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
547-732
               

               
Cow position:
               
chrX:10851584-10851766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chrX:4325525-4325711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 173
               

               
Conread position:
               
548-732
               

               
Cow position:
               
chrX:11713327-11713510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
549-725
               

               
Cow position:
               
chrX:32802928-32803103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
551-732
               

               
Cow position:
               
chrX:4664646-4664834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
552-732
               

               
Cow position:
               
chrX:11799673-11799496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 112
               

               
Conread position:
               
554-721
               

               
Cow position:
               
chrX:36133237-36133403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
554-732
               

               
Cow position:
               
chrX:9439483-9439308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
555-718
               

               
Cow position:
               
chrX:21217632-21217797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
555-724
               

               
Cow position:
               
chrX:39750806-39750634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
557-732
               

               
Cow position:
               
chrX:37576270-37576099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
560-732
               

               
Cow position:
               
chrX:43702056-43702228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
85, 162
               

               
Conread position:
               
562-711
               

               
Cow position:
               
chrX:18799102-18799253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
565-701
               

               
Cow position:
               
chrX:19656926-19657064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
565-725
               

               
Cow position:
               
chrX:19400862-19400702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
565-726
               

               
Cow position:
               
chrX:5069398-5069560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
565-732
               

               
Cow position:
               
chrX:16988931-16988771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
569-725
               

               
Cow position:
               
chrX:12110708-12110865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
570-724
               

               
Cow position:
               
chrX:4499568-4499416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
571-732
               

               
Cow position:
               
chrX:873888-873729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
572-722
               

               
Cow position:
               
chrX:36239121-36239272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
572-723
               

               
Cow position:
               
chrX:6683732-6683885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
575-725
               

               
Cow position:
               
chrX:32002483-32002635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
576-729
               

               
Cow position:
               
chrX:42926138-42926292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
578-732
               

               
Cow position:
               
chrX:11674998-11674847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
580-725
               

               
Cow position:
               
chrX:2255871-2256016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
586-732
               

               
Cow position:
               
chrX:20445268-20445415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
588-729
               

               
Cow position:
               
chrX:909053-908911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
593-732
               

               
Cow position:
               
chrX:34079287-34079148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
602-729
               

               
Cow position:
               
chrX:14618722-14618595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 103
               

               
Conread position:
               
610-732
               

               
Cow position:
               
chrX:25738964-25738841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
610-732
               

               
Cow position:
               
chrX:27678255-27678134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
36, 48
               
Show alignments to all cow chromosomes.