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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8031J08.3
        

               
Conread position:
               
1-115
               

               
Cow position:
               
chr1:40513526-40513413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr1:17941836-17941715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr1:62805831-62805707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr1:69922491-69922354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr1:15347610-15347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:25550038-25550198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:79920752-79920544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:85533439-85533222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
177, 79
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:23050813-23051063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:33895654-33895919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:53045805-53045558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:20988927-20989198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 43
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:73242445-73242717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:48245786-48246094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:73071082-73070776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:100075094-100075389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
255, 27
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:3386032-3385733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:33550893-33551205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:72186898-72186590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:79335830-79335517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:88130745-88131058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:93854495-93854808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:100597407-100597086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr1:57567925-57568240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:55276511-55276194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:67835164-67834843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 67
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:40684716-40684393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr1:56489815-56490139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:11900676-11900353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:68607569-68607244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 0
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:85791662-85791986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 75
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:8554303-8554629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:11292129-11291805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 105
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:13450183-13450507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 165
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:17012761-17012438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 12
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:17036583-17036256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:18880418-18880092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:20828864-20829190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:21087388-21087714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:28710891-28711217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:29362271-29362597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:30283567-30283242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 153
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:33851253-33851578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 288
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:40053330-40053656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:40574190-40574514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 270
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:49974216-49973890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:56144363-56144038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:56163301-56163627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:56723130-56723455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 212
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:58884093-58883767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:59210164-59209838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:62925588-62925914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:69766437-69766763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:71562603-71562273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:72080747-72081079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:79456993-79456672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 92
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:82564478-82564804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:86548159-86547834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 75
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:86699243-86698917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:89425562-89425874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 189
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:91893144-91892823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 200
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:91898973-91899297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 135
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:42290368-42290691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 52
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:82918687-82918356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 175
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:101149807-101150141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:101858009-101857678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 169
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:12062222-12061889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:38414775-38415106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 175
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:39543746-39544078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 107
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:91718660-91718330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 48
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr1:52918645-52918319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
75, 161
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr1:61308977-61309319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 0
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr1:21999981-21999635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 133
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr1:69536877-69537223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 82
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr1:62853869-62853512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 75
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr1:39482006-39481652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 72
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:28873052-28873409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 46
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:42736431-42736787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 48
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:56193957-56193598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 327
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:57367158-57366797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 327
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:58335811-58336170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 98
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:62244673-62244312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 327
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:72981242-72981602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 100
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:76545568-76545203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:76622983-76622622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 342
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr1:18406218-18405857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 36
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr1:28801445-28801060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 372
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr1:45097677-45098035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 43
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr1:52233137-52232775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 80
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:40308041-40308398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 80
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:79636955-79636595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 61
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:82924203-82923840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 87
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:85780803-85780439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 114
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:89770708-89770344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 49
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:31330813-31330410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
248, 100
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:73009775-73010158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
292, 49
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr1:88270621-88270225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
315, 62
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr1:13880110-13880508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
45, 164
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr1:54365849-54365439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 133
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr1:89479296-89479704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 48
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr1:7144464-7144270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr1:85672041-85671768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 166
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chr1:102549206-102549507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
2-303
               

               
Cow position:
               
chr1:55776129-55776413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr1:63605806-63605494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr1:8825026-8825344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr1:18014214-18013880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
104, 41
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr1:52359300-52358955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 132
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr1:76752678-76752316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 337
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr1:1461352-1460992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 38
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr1:97226730-97226372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 201
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr1:32342099-32341696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 81
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr1:38385309-38384916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr1:72136615-72137041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 393
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr1:98784027-98784265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr1:77117614-77117356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr1:21356663-21356391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 242
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr1:58201695-58201383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 177
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr1:69402969-69403279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 41
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr1:25180054-25179730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 0
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr1:60339282-60339606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 0
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr1:31396667-31397007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 0
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr1:77112467-77112116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
173, 61
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr1:13645704-13646053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 58
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr1:31366100-31365709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 295
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr1:67901944-67901513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 35
               

               
Conread position:
               
4-142
               

               
Cow position:
               
chr1:59674462-59674594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chr1:78920090-78920402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
4-326
               

               
Cow position:
               
chr1:99349058-99348737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 39
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr1:18244402-18244083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 40
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr1:88635349-88635679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 196
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr1:89899724-89899397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr1:84986978-84986644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
169, 106
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr1:37419774-37419443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr1:56856534-56856881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
299, 96
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr1:94659668-94660017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 43
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr1:102435061-102434704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 224
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr1:28722850-28723214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 351
               

               
Conread position:
               
4-370
               

               
Cow position:
               
chr1:72656959-72657327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
4-402
               

               
Cow position:
               
chr1:36919885-36920301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chr1:72942799-72943081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr1:69287588-69287302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr1:87244791-87245119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr1:33712042-33712401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 332
               

               
Conread position:
               
6-307
               

               
Cow position:
               
chr1:88396281-88395987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr1:44101765-44101532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 7
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr1:82652636-82652954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 0
               

               
Conread position:
               
10-371
               

               
Cow position:
               
chr1:57656530-57656884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 39
               

               
Conread position:
               
12-325
               

               
Cow position:
               
chr1:67286474-67286785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 191
               

               
Conread position:
               
13-357
               

               
Cow position:
               
chr1:11863252-11862931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 27
               

               
Conread position:
               
14-333
               

               
Cow position:
               
chr1:88682435-88682115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
172, 146
               

               
Conread position:
               
14-354
               

               
Cow position:
               
chr1:19992693-19992363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 14
               

               
Conread position:
               
14-445
               

               
Cow position:
               
chr1:46835512-46835946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 87
               

               
Conread position:
               
14-509
               

               
Cow position:
               
chr1:55323067-55322568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 30
               

               
Conread position:
               
15-386
               

               
Cow position:
               
chr1:34689330-34689707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 115
               

               
Conread position:
               
16-242
               

               
Cow position:
               
chr1:15025881-15026106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 88
               

               
Conread position:
               
16-335
               

               
Cow position:
               
chr1:59644838-59645145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
293, 33
               

               
Conread position:
               
18-326
               

               
Cow position:
               
chr1:80359187-80358880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 158
               

               
Conread position:
               
18-326
               

               
Cow position:
               
chr1:85881995-85882302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 139
               

               
Conread position:
               
18-334
               

               
Cow position:
               
chr1:87207436-87207120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-307
               

               
Cow position:
               
chr1:99910956-99911239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
21-371
               

               
Cow position:
               
chr1:97123811-97124149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
28-291
               

               
Cow position:
               
chr1:99020963-99020698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 195
               

               
Conread position:
               
32-291
               

               
Cow position:
               
chr1:28276646-28276923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 56
               

               
Conread position:
               
34-251
               

               
Cow position:
               
chr1:86609196-86609428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
34-307
               

               
Cow position:
               
chr1:97056106-97055840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
34-400
               

               
Cow position:
               
chr1:63501460-63501817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 243
               

               
Conread position:
               
34-413
               

               
Cow position:
               
chr1:30027539-30027158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
35-252
               

               
Cow position:
               
chr1:30058549-30058764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
88, 147
               

               
Conread position:
               
40-413
               

               
Cow position:
               
chr1:25887150-25886772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 44
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr1:99374974-99375347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
42-335
               

               
Cow position:
               
chr1:82355738-82356024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
276, 31
               

               
Conread position:
               
42-405
               

               
Cow position:
               
chr1:5318765-5319126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
149, 18
               

               
Conread position:
               
44-278
               

               
Cow position:
               
chr1:85748088-85747853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
226, 168
               

               
Conread position:
               
47-326
               

               
Cow position:
               
chr1:9382526-9382247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
47-355
               

               
Cow position:
               
chr1:102556077-102556381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
284, 15
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:82913120-82912843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 0
               

               
Conread position:
               
53-171
               

               
Cow position:
               
chr1:29950294-29950176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-307
               

               
Cow position:
               
chr1:66686499-66686258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
195, 19
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr1:95239408-95239670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr1:98865115-98864791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 238
               

               
Conread position:
               
68-242
               

               
Cow position:
               
chr1:33388335-33388503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
68-253
               

               
Cow position:
               
chr1:38387640-38387458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
111, 165
               

               
Conread position:
               
68-314
               

               
Cow position:
               
chr1:84149461-84149706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
68-326
               

               
Cow position:
               
chr1:78289905-78290164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
68-405
               

               
Cow position:
               
chr1:78360784-78361121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
269, 77
               

               
Conread position:
               
68-406
               

               
Cow position:
               
chr1:79109321-79109652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
68-408
               

               
Cow position:
               
chr1:77655742-77656067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
241, 40
               

               
Conread position:
               
68-416
               

               
Cow position:
               
chr1:80556030-80555702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
69-326
               

               
Cow position:
               
chr1:5501976-5502234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
70-286
               

               
Cow position:
               
chr1:21476434-21476651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 175
               

               
Conread position:
               
73-317
               

               
Cow position:
               
chr1:89740217-89739978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
82-270
               

               
Cow position:
               
chr1:45023532-45023346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
85-363
               

               
Cow position:
               
chr1:61738455-61738180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
105, 116
               

               
Conread position:
               
86-238
               

               
Cow position:
               
chr1:60280453-60280301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-306
               

               
Cow position:
               
chr1:40953967-40954181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
93-307
               

               
Cow position:
               
chr1:97044632-97044429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
99-335
               

               
Cow position:
               
chr1:44138272-44138039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
212, 35
               

               
Conread position:
               
100-370
               

               
Cow position:
               
chr1:17941709-17941448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
7, 80
               

               
Conread position:
               
108-335
               

               
Cow position:
               
chr1:38396310-38396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
131-509
               

               
Cow position:
               
chr1:24650861-24651247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
141-314
               

               
Cow position:
               
chr1:69922324-69922151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
141-509
               

               
Cow position:
               
chr1:40513264-40512889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 131
               

               
Conread position:
               
144-364
               

               
Cow position:
               
chr1:65386445-65386663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
174, 199
               

               
Conread position:
               
152-332
               

               
Cow position:
               
chr1:69060621-69060791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
157, 49
               

               
Conread position:
               
161-509
               

               
Cow position:
               
chr1:94253052-94253409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 260
               

               
Conread position:
               
165-498
               

               
Cow position:
               
chr1:21720027-21720360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 207
               

               
Conread position:
               
172-367
               

               
Cow position:
               
chr1:59674595-59674790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
137, 191
               

               
Conread position:
               
176-364
               

               
Cow position:
               
chr1:18027620-18027435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
133, 161
               

               
Conread position:
               
177-401
               

               
Cow position:
               
chr1:67314673-67314904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 106
               

               
Conread position:
               
179-377
               

               
Cow position:
               
chr1:72039196-72038992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr1:42870088-42869714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 214
               

               
Conread position:
               
190-335
               

               
Cow position:
               
chr1:87516120-87515974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
211-314
               

               
Cow position:
               
chr1:30534840-30534737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
212-334
               

               
Cow position:
               
chr1:5355312-5355435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
219-326
               

               
Cow position:
               
chr1:57424646-57424538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr1:38387458-38387200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
541-744
               

               
Cow position:
               
chr1:38387223-38387022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
543-734
               

               
Cow position:
               
chr1:29414018-29413829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
599-731
               

               
Cow position:
               
chr1:40512867-40512734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
599-736
               

               
Cow position:
               
chr1:67287014-67287148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               
Show alignments to all cow chromosomes.