Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-235 |
| Cow position: | chr12:347748-347986 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 1-239 |
| Cow position: | chr12:8982493-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 1-247 |
| Cow position: | chr12:26141737-26141983 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-307 |
| Cow position: | chr12:21426617-21426923 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr12:8678199-8677885 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 1-326 |
| Cow position: | chr12:3360827-3361153 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr12:6406725-6406402 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 270 |
| Conread position: | 1-326 |
| Cow position: | chr12:11098165-11098491 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 263 |
| Conread position: | 1-326 |
| Cow position: | chr12:22205823-22205499 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 144 |
| Conread position: | 1-326 |
| Cow position: | chr12:32653468-32653793 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 58 |
| Conread position: | 1-326 |
| Cow position: | chr12:37558478-37558805 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 1-333 |
| Cow position: | chr12:21254732-21254399 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 76 |
| Conread position: | 1-333 |
| Cow position: | chr12:45261541-45261880 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 39 |
| Conread position: | 1-334 |
| Cow position: | chr12:2722-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 0 |
| Conread position: | 1-349 |
| Cow position: | chr12:1402414-1402761 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 240 |
| Conread position: | 1-352 |
| Cow position: | chr12:25101138-25100785 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 0 |
| Conread position: | 1-365 |
| Cow position: | chr12:27933022-27932659 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 327 |
| Conread position: | 1-370 |
| Cow position: | chr12:28766097-28765724 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-405 |
| Cow position: | chr12:3632331-3631935 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 234, 25 |
| Conread position: | 1-413 |
| Cow position: | chr12:21500042-21500440 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 17 |
| Conread position: | 1-506 |
| Cow position: | chr12:15951341-15950836 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 164 |
| Conread position: | 2-307 |
| Cow position: | chr12:252132-251829 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 2-334 |
| Cow position: | chr12:2282471-2282803 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 48 |
| Conread position: | 2-334 |
| Cow position: | chr12:21901864-21902197 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 145 |
| Conread position: | 2-364 |
| Cow position: | chr12:20998197-20997850 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 42 |
| Conread position: | 3-252 |
| Cow position: | chr12:21207620-21207868 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-326 |
| Cow position: | chr12:43031458-43031136 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 161 |
| Conread position: | 3-336 |
| Cow position: | chr12:21227529-21227191 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 278 |
| Conread position: | 4-333 |
| Cow position: | chr12:22332546-22332881 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 103 |
| Conread position: | 4-370 |
| Cow position: | chr12:8311112-8311470 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 69 |
| Conread position: | 6-315 |
| Cow position: | chr12:42859900-42859590 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 7-278 |
| Cow position: | chr12:16293858-16294134 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 8-246 |
| Cow position: | chr12:17128389-17128155 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 9-283 |
| Cow position: | chr12:1137515-1137778 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 169 |
| Conread position: | 13-432 |
| Cow position: | chr12:34854856-34854449 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 14-317 |
| Cow position: | chr12:14693571-14693862 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 158, 35 |
| Conread position: | 14-410 |
| Cow position: | chr12:4188905-4189306 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 24-334 |
| Cow position: | chr12:21941710-21942026 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 216 |
| Conread position: | 29-356 |
| Cow position: | chr12:2838903-2838575 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 216 |
| Conread position: | 34-422 |
| Cow position: | chr12:18501001-18501375 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 15 |
| Conread position: | 37-413 |
| Cow position: | chr12:26947033-26946658 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 247 |
| Conread position: | 39-249 |
| Cow position: | chr12:48405232-48405443 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 44-225 |
| Cow position: | chr12:16326674-16326845 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 55-370 |
| Cow position: | chr12:21197935-21198248 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 284 |
| Conread position: | 56-364 |
| Cow position: | chr12:14662655-14662350 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 281 |
| Conread position: | 68-291 |
| Cow position: | chr12:17975530-17975750 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 73-343 |
| Cow position: | chr12:33986157-33986428 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 122-259 |
| Cow position: | chr12:48211761-48211632 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 133-354 |
| Cow position: | chr12:5861209-5861430 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 139-333 |
| Cow position: | chr12:23240065-23240260 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 170, 98 |
| Conread position: | 205-406 |
| Cow position: | chr12:1868660-1868859 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 220-370 |
| Cow position: | chr12:31544920-31545067 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 117 |
| Conread position: | 231-326 |
| Cow position: | chr12:4157530-4157626 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.