Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-113
Cow position: chr13:32544643-32544754 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 1-132
Cow position: chr13:34868475-34868606 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-144
Cow position: chr13:2232362-2232505 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-178
Cow position: chr13:48357003-48357184 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 137

Conread position: 1-198
Cow position: chr13:2583601-2583407 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 12, 50

Conread position: 1-204
Cow position: chr13:10114949-10114748 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 74, 158

Conread position: 1-247
Cow position: chr13:15080503-15080270 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 160, 41

Conread position: 1-247
Cow position: chr13:30140697-30140943 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 187, 48

Conread position: 1-252
Cow position: chr13:30245031-30244780 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-266
Cow position: chr13:41312062-41311794 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 69, 173

Conread position: 1-295
Cow position: chr13:21131029-21131317 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 255, 50

Conread position: 1-314
Cow position: chr13:34042662-34042354 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-319
Cow position: chr13:2908748-2908428 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 0

Conread position: 1-325
Cow position: chr13:34325973-34325648 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 186

Conread position: 1-326
Cow position: chr13:1593451-1593127 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 76

Conread position: 1-326
Cow position: chr13:2297096-2296783 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 201

Conread position: 1-326
Cow position: chr13:2389120-2388790 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-326
Cow position: chr13:4872779-4873104 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 254

Conread position: 1-326
Cow position: chr13:15924682-15924356 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr13:21840492-21840166 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr13:31734379-31734057 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 189

Conread position: 1-326
Cow position: chr13:32986347-32986029 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 17

Conread position: 1-326
Cow position: chr13:35756943-35757269 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 0

Conread position: 1-326
Cow position: chr13:49973385-49973712 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-326
Cow position: chr13:50109164-50109490 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-327
Cow position: chr13:3567485-3567823 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 1-332
Cow position: chr13:43852597-43852261 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 219
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 198, 100

Conread position: 1-333
Cow position: chr13:33825027-33824699 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 48

Conread position: 1-334
Cow position: chr13:34911670-34911343 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 11

Conread position: 1-335
Cow position: chr13:22186030-22185702 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 310, 48

Conread position: 1-335
Cow position: chr13:31560892-31561224 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 48

Conread position: 1-349
Cow position: chr13:35030251-35030599 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 43

Conread position: 1-364
Cow position: chr13:31612633-31612273 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 244

Conread position: 1-367
Cow position: chr13:34186985-34186613 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 255

Conread position: 1-368
Cow position: chr13:32738118-32737755 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 127

Conread position: 1-370
Cow position: chr13:34692865-34693233 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 338

Conread position: 1-414
Cow position: chr13:34767574-34767178 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 26

Conread position: 1-509
Cow position: chr13:20542666-20542162 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 51

Conread position: 1-509
Cow position: chr13:54284283-54284789 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 41

Conread position: 2-177
Cow position: chr13:30302769-30302942 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 145
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 116, 0

Conread position: 2-318
Cow position: chr13:58261820-58262126 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 189, 26

Conread position: 2-326
Cow position: chr13:4940790-4941116 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 2-326
Cow position: chr13:17308178-17308503 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 2-367
Cow position: chr13:30657265-30656909 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 51

Conread position: 2-405
Cow position: chr13:30063832-30064224 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 21

Conread position: 2-406
Cow position: chr13:2306206-2306604 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 41

Conread position: 3-185
Cow position: chr13:22697078-22697255 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 25

Conread position: 3-245
Cow position: chr13:43801678-43801916 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 20

Conread position: 3-290
Cow position: chr13:23003811-23003527 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 3-365
Cow position: chr13:9044215-9044565 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 25

Conread position: 3-379
Cow position: chr13:3654605-3654247 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 137

Conread position: 4-255
Cow position: chr13:34387729-34387476 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 174

Conread position: 4-334
Cow position: chr13:31832305-31832633 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 0

Conread position: 4-334
Cow position: chr13:56730578-56730251 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 87

Conread position: 4-362
Cow position: chr13:62327878-62327524 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 8

Conread position: 4-370
Cow position: chr13:6668418-6668053 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 328

Conread position: 4-370
Cow position: chr13:33927857-33927519 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 40

Conread position: 4-370
Cow position: chr13:34142952-34142584 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 24

Conread position: 4-371
Cow position: chr13:3276863-3277224 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 76

Conread position: 4-394
Cow position: chr13:34936850-34937248 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 24

Conread position: 4-406
Cow position: chr13:19220115-19219705 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 272
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 186, 100

Conread position: 6-307
Cow position: chr13:47230279-47229979 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 7-240
Cow position: chr13:38441716-38441484 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 173, 92

Conread position: 8-326
Cow position: chr13:13324458-13324777 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 8-326
Cow position: chr13:15520806-15520487 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 14-401
Cow position: chr13:60701569-60701201 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 144, 35

Conread position: 21-364
Cow position: chr13:4483525-4483857 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 60

Conread position: 23-314
Cow position: chr13:28672910-28672620 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 199
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 286, 189

Conread position: 25-314
Cow position: chr13:33336616-33336333 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 29-333
Cow position: chr13:16343484-16343182 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 11

Conread position: 34-289
Cow position: chr13:19438672-19438923 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 145, 21

Conread position: 34-308
Cow position: chr13:27748479-27748204 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 182
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 46

Conread position: 38-149
Cow position: chr13:15451758-15451649 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 40-349
Cow position: chr13:46732479-46732174 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 44-327
Cow position: chr13:4178906-4178622 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 0

Conread position: 47-299
Cow position: chr13:28706386-28706134 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 54

Conread position: 69-358
Cow position: chr13:11224873-11224582 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 69

Conread position: 77-230
Cow position: chr13:11800004-11799853 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 128, 7

Conread position: 77-314
Cow position: chr13:3338565-3338803 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 143, 171

Conread position: 105-242
Cow position: chr13:57023658-57023794 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 106-333
Cow position: chr13:21601386-21601615 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 70

Conread position: 122-259
Cow position: chr13:30237941-30238078 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 127-326
Cow position: chr13:60466165-60466365 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 0

Conread position: 129-326
Cow position: chr13:3058281-3058082 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 157-326
Cow position: chr13:32544917-32545087 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 160, 0

Conread position: 165-352
Cow position: chr13:34868606-34868796 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 21, 92

Conread position: 167-413
Cow position: chr13:34111163-34111403 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 151, 68

Conread position: 176-326
Cow position: chr13:676752-676904 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 130
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 6, 0

Conread position: 208-497
Cow position: chr13:15451647-15451358 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 111

Conread position: 209-543
Cow position: chr13:11799852-11799531 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 54, 129

Conread position: 219-370
Cow position: chr13:22765943-22766091 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 118

Conread position: 560-732
Cow position: chr13:48357439-48357605 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 155, 103

Conread position: 595-744
Cow position: chr13:26844015-26844158 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 138, 69

Conread position: 599-721
Cow position: chr13:15451321-15451205 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.