Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-173
Cow position: chr16:32606061-32606233 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 139
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-201
Cow position: chr16:16276273-16276075 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 14

Conread position: 1-275
Cow position: chr16:55111614-55111337 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 164, 22

Conread position: 1-307
Cow position: chr16:27734571-27734264 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 1-311
Cow position: chr16:11639165-11639483 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 84, 41

Conread position: 1-314
Cow position: chr16:407802-407486 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 1-314
Cow position: chr16:836262-836574 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 1-314
Cow position: chr16:10437475-10437788 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr16:12538691-12538380 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 1-314
Cow position: chr16:14666597-14666284 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr16:15184036-15184348 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 1-314
Cow position: chr16:15565982-15566289 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 1-314
Cow position: chr16:28471862-28471556 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 109

Conread position: 1-315
Cow position: chr16:40296942-40296632 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-322
Cow position: chr16:5918718-5919037 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 83

Conread position: 1-326
Cow position: chr16:1568222-1567896 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr16:2239501-2239182 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 27

Conread position: 1-326
Cow position: chr16:2728068-2727730 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 49

Conread position: 1-326
Cow position: chr16:5483555-5483881 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr16:5661093-5661408 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 43

Conread position: 1-326
Cow position: chr16:6942856-6943190 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 1-326
Cow position: chr16:8816872-8816546 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 0

Conread position: 1-326
Cow position: chr16:10204184-10203872 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 54

Conread position: 1-326
Cow position: chr16:25187875-25188200 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 207

Conread position: 1-326
Cow position: chr16:25341201-25341523 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 66

Conread position: 1-326
Cow position: chr16:25440850-25441182 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 0

Conread position: 1-326
Cow position: chr16:25458239-25457907 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 0

Conread position: 1-326
Cow position: chr16:26662981-26663307 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 100

Conread position: 1-326
Cow position: chr16:28171127-28170805 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 81

Conread position: 1-326
Cow position: chr16:43898035-43897713 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 175

Conread position: 1-333
Cow position: chr16:39820868-39821196 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 19

Conread position: 1-334
Cow position: chr16:11052396-11052726 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 12

Conread position: 1-334
Cow position: chr16:28438551-28438220 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 42

Conread position: 1-348
Cow position: chr16:51685674-51686015 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 46

Conread position: 1-349
Cow position: chr16:15491941-15492289 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 49

Conread position: 1-349
Cow position: chr16:23253272-23252927 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 61

Conread position: 1-364
Cow position: chr16:2411738-2411375 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 328

Conread position: 1-367
Cow position: chr16:23982544-23982907 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-370
Cow position: chr16:20255077-20254713 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 41

Conread position: 1-370
Cow position: chr16:36362125-36361764 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 27

Conread position: 1-371
Cow position: chr16:24155208-24154836 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 178, 42

Conread position: 1-425
Cow position: chr16:32935392-32935832 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 75

Conread position: 1-427
Cow position: chr16:10566050-10565622 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 280
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 111

Conread position: 1-450
Cow position: chr16:49257351-49256896 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 140

Conread position: 1-509
Cow position: chr16:25156987-25156473 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 71

Conread position: 2-274
Cow position: chr16:36232371-36232110 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 2-276
Cow position: chr16:5651983-5652243 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 184, 76

Conread position: 2-306
Cow position: chr16:2483905-2483605 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 26

Conread position: 2-320
Cow position: chr16:9777317-9777637 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 2-325
Cow position: chr16:31592671-31592350 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 269

Conread position: 2-326
Cow position: chr16:29046255-29046580 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 2-336
Cow position: chr16:56551360-56551689 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 53

Conread position: 2-413
Cow position: chr16:335529-335935 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 47

Conread position: 3-215
Cow position: chr16:4303236-4303031 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 3-238
Cow position: chr16:40887023-40886791 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 133, 0

Conread position: 3-327
Cow position: chr16:25084856-25085180 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 47

Conread position: 3-365
Cow position: chr16:47562921-47563291 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 159, 35

Conread position: 3-413
Cow position: chr16:44966405-44966808 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 113

Conread position: 3-425
Cow position: chr16:9929779-9930197 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 44

Conread position: 4-145
Cow position: chr16:29676073-29675934 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 4-147
Cow position: chr16:29032395-29032537 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 4-168
Cow position: chr16:1430459-1430622 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 151, 0

Conread position: 4-256
Cow position: chr16:11111703-11111455 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 177, 59

Conread position: 4-333
Cow position: chr16:10808392-10808716 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 38

Conread position: 4-333
Cow position: chr16:36282636-36282963 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 186

Conread position: 4-334
Cow position: chr16:16030023-16030351 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 39

Conread position: 4-352
Cow position: chr16:6549287-6548940 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 38

Conread position: 4-405
Cow position: chr16:33611844-33611433 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 114

Conread position: 4-485
Cow position: chr16:42740183-42739697 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 24

Conread position: 5-332
Cow position: chr16:51448950-51449285 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 12, 44

Conread position: 7-393
Cow position: chr16:18500106-18499722 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 48

Conread position: 8-175
Cow position: chr16:18687883-18687719 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 154, 45

Conread position: 8-326
Cow position: chr16:53045592-53045912 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 8-385
Cow position: chr16:34529564-34529934 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 36

Conread position: 8-411
Cow position: chr16:31376021-31375633 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 74

Conread position: 10-195
Cow position: chr16:25932460-25932632 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 10-398
Cow position: chr16:24454339-24453940 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 259
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 268

Conread position: 14-333
Cow position: chr16:13002354-13002667 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 181, 66

Conread position: 14-370
Cow position: chr16:19713639-19713291 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 118

Conread position: 17-307
Cow position: chr16:5296127-5296415 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 191
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 12, 110

Conread position: 27-332
Cow position: chr16:41559919-41560215 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 22

Conread position: 28-334
Cow position: chr16:31999-32304 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 168

Conread position: 29-236
Cow position: chr16:26650690-26650895 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 150, 64

Conread position: 32-401
Cow position: chr16:6966993-6967357 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 239
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 284, 0

Conread position: 33-321
Cow position: chr16:48681812-48681524 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 144

Conread position: 34-325
Cow position: chr16:25294102-25294387 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 194
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 172, 39

Conread position: 40-299
Cow position: chr16:42051110-42050857 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 49-241
Cow position: chr16:45797486-45797675 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 133
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 67-509
Cow position: chr16:49235848-49235399 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 34

Conread position: 76-333
Cow position: chr16:7905928-7906185 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 59

Conread position: 82-335
Cow position: chr16:41758134-41757881 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 229, 94

Conread position: 102-326
Cow position: chr16:31831964-31832190 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 103-335
Cow position: chr16:13018434-13018667 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 43

Conread position: 126-366
Cow position: chr16:30047850-30048091 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 177, 38

Conread position: 132-335
Cow position: chr16:23670264-23670067 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 132-413
Cow position: chr16:52815124-52814840 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 101

Conread position: 146-528
Cow position: chr16:29033094-29033480 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 40

Conread position: 163-432
Cow position: chr16:48626628-48626893 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 146, 89

Conread position: 190-334
Cow position: chr16:29675957-29675813 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 127, 27

Conread position: 205-463
Cow position: chr16:16273398-16273132 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 72

Conread position: 207-334
Cow position: chr16:4302890-4302765 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 213-336
Cow position: chr16:25153167-25153291 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 96, 0

Conread position: 220-509
Cow position: chr16:25257055-25257353 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 149

Conread position: 255-453
Cow position: chr16:23807454-23807660 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 41, 52

Conread position: 296-509
Cow position: chr16:42050598-42050393 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 13, 57

Conread position: 599-737
Cow position: chr16:18499269-18499136 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 79, 0

Conread position: 605-732
Cow position: chr16:5889970-5890096 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.