Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-168
Cow position: chr17:15322623-15322786 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 1-216
Cow position: chr17:22160726-22160941 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-239
Cow position: chr17:4672002-4672231 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 101

Conread position: 1-252
Cow position: chr17:24780858-24781109 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-307
Cow position: chr17:2555933-2556238 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 1-314
Cow position: chr17:11087914-11087601 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr17:13856959-13856646 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr17:13929478-13929791 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr17:18325443-18325125 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 87, 42

Conread position: 1-314
Cow position: chr17:25737473-25737786 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position: chr17:6259655-6259974 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 253

Conread position: 1-323
Cow position: chr17:9653646-9653323 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-324
Cow position: chr17:2248771-2248450 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 27

Conread position: 1-325
Cow position: chr17:43988345-43988668 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 165

Conread position: 1-326
Cow position: chr17:228492-228172 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 49

Conread position: 1-326
Cow position: chr17:1383004-1382678 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr17:2261919-2262238 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 101

Conread position: 1-326
Cow position: chr17:8208917-8209242 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 100

Conread position: 1-326
Cow position: chr17:14893971-14894289 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 150

Conread position: 1-326
Cow position: chr17:15157153-15156828 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 189

Conread position: 1-326
Cow position: chr17:15435601-15435927 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr17:18103870-18103549 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 260

Conread position: 1-326
Cow position: chr17:19269556-19269230 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 0

Conread position: 1-326
Cow position: chr17:20665916-20665590 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr17:24633764-24634090 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-333
Cow position: chr17:1879902-1880238 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 156

Conread position: 1-333
Cow position: chr17:1946788-1947113 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 41

Conread position: 1-333
Cow position: chr17:14217214-14216882 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 319

Conread position: 1-334
Cow position: chr17:2287196-2287530 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 1-343
Cow position: chr17:6089351-6089008 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-364
Cow position: chr17:3643026-3642666 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 327

Conread position: 1-370
Cow position: chr17:16418024-16417650 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 120, 125

Conread position: 1-370
Cow position: chr17:20087921-20087568 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 106

Conread position: 1-401
Cow position: chr17:2173690-2174092 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 54

Conread position: 1-429
Cow position: chr17:6002199-6001777 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 17

Conread position: 1-509
Cow position: chr17:14325686-14325186 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 43

Conread position: 2-249
Cow position: chr17:18849509-18849756 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 2-307
Cow position: chr17:16859745-16859452 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 2-324
Cow position: chr17:2588127-2588437 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 48

Conread position: 2-367
Cow position: chr17:22429671-22429312 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 37

Conread position: 2-406
Cow position: chr17:1658760-1658343 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 180, 66

Conread position: 2-424
Cow position: chr17:42264316-42264738 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 47

Conread position: 2-425
Cow position: chr17:4081457-4081876 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 31

Conread position: 3-222
Cow position: chr17:12670635-12670423 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 3-307
Cow position: chr17:40834567-40834857 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 187, 37

Conread position: 3-326
Cow position: chr17:15143557-15143231 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 3-326
Cow position: chr17:15850212-15850533 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 44

Conread position: 3-326
Cow position: chr17:23324641-23324318 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 25

Conread position: 3-333
Cow position: chr17:4059915-4060243 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 25

Conread position: 4-98
Cow position: chr17:602695-602601 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-326
Cow position: chr17:44853121-44852797 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 298

Conread position: 4-327
Cow position: chr17:27345618-27345935 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 81

Conread position: 4-333
Cow position: chr17:22132044-22132372 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 135

Conread position: 4-333
Cow position: chr17:23857223-23856890 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 4-333
Cow position: chr17:35592028-35592358 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 38

Conread position: 4-334
Cow position: chr17:18026944-18026613 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 4-355
Cow position: chr17:16889936-16890288 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 36

Conread position: 4-367
Cow position: chr17:20183416-20183061 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 8-370
Cow position: chr17:18185716-18185359 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 233

Conread position: 10-300
Cow position: chr17:4286907-4287187 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 5, 64

Conread position: 16-364
Cow position: chr17:2579457-2579786 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 43

Conread position: 24-469
Cow position: chr17:15370879-15371335 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 166

Conread position: 25-367
Cow position: chr17:152651-152292 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 220

Conread position: 30-424
Cow position: chr17:4295190-4295581 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 80

Conread position: 30-425
Cow position: chr17:20401513-20401898 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 138

Conread position: 34-307
Cow position: chr17:20812480-20812213 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 15

Conread position: 34-325
Cow position: chr17:38872918-38873204 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 36, 101

Conread position: 42-364
Cow position: chr17:31199792-31199485 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 17, 106

Conread position: 44-335
Cow position: chr17:18325138-18324853 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 130, 38

Conread position: 52-234
Cow position: chr17:14308451-14308270 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 95

Conread position: 65-364
Cow position: chr17:40804690-40804988 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 264

Conread position: 82-299
Cow position: chr17:249827-250047 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 52

Conread position: 86-326
Cow position: chr17:181258-181499 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 87-411
Cow position: chr17:2147072-2147385 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 240
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 49, 15

Conread position: 92-333
Cow position: chr17:602523-602294 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 87

Conread position: 110-287
Cow position: chr17:26205888-26205711 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 151
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 111-364
Cow position: chr17:3709284-3709038 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 205, 35

Conread position: 125-314
Cow position: chr17:6068568-6068753 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 152, 36

Conread position: 133-370
Cow position: chr17:1283763-1283529 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 204

Conread position: 154-355
Cow position: chr17:22557583-22557785 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 85

Conread position: 157-326
Cow position: chr17:43952596-43952427 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 140
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 152, 22

Conread position: 160-314
Cow position: chr17:15323215-15323368 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 84, 0

Conread position: 161-324
Cow position: chr17:31768069-31767905 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 137
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 148, 0

Conread position: 172-326
Cow position: chr17:34156109-34156264 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 130
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 137, 0

Conread position: 182-536
Cow position: chr17:36987680-36987348 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 124

Conread position: 192-350
Cow position: chr17:14041044-14040886 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 116, 58

Conread position: 203-307
Cow position: chr17:602695-602799 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 602-744
Cow position: chr17:20402103-20402241 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 606-744
Cow position: chr17:152079-151943 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 29

Show alignments to all cow chromosomes.