Cow genome map
Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
Conread position: | 1-168 |
Cow position: | chr17:15322623-15322786 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 131 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 1-216 |
Cow position: | chr17:22160726-22160941 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-239 |
Cow position: | chr17:4672002-4672231 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 166 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 52, 101 |
Conread position: | 1-252 |
Cow position: | chr17:24780858-24781109 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-307 |
Cow position: | chr17:2555933-2556238 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 0 |
Conread position: | 1-314 |
Cow position: | chr17:11087914-11087601 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-314 |
Cow position: | chr17:13856959-13856646 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-314 |
Cow position: | chr17:13929478-13929791 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-314 |
Cow position: | chr17:18325443-18325125 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 219 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 87, 42 |
Conread position: | 1-314 |
Cow position: | chr17:25737473-25737786 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-320 |
Cow position: | chr17:6259655-6259974 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 317, 253 |
Conread position: | 1-323 |
Cow position: | chr17:9653646-9653323 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 0 |
Conread position: | 1-324 |
Cow position: | chr17:2248771-2248450 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 27 |
Conread position: | 1-325 |
Cow position: | chr17:43988345-43988668 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 165 |
Conread position: | 1-326 |
Cow position: | chr17:228492-228172 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 49 |
Conread position: | 1-326 |
Cow position: | chr17:1383004-1382678 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 0 |
Conread position: | 1-326 |
Cow position: | chr17:2261919-2262238 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 101 |
Conread position: | 1-326 |
Cow position: | chr17:8208917-8209242 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 318, 100 |
Conread position: | 1-326 |
Cow position: | chr17:14893971-14894289 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 150 |
Conread position: | 1-326 |
Cow position: | chr17:15157153-15156828 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 189 |
Conread position: | 1-326 |
Cow position: | chr17:15435601-15435927 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 0 |
Conread position: | 1-326 |
Cow position: | chr17:18103870-18103549 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 260 |
Conread position: | 1-326 |
Cow position: | chr17:19269556-19269230 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 316, 0 |
Conread position: | 1-326 |
Cow position: | chr17:20665916-20665590 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 0 |
Conread position: | 1-326 |
Cow position: | chr17:24633764-24634090 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 0 |
Conread position: | 1-333 |
Cow position: | chr17:1879902-1880238 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 177, 156 |
Conread position: | 1-333 |
Cow position: | chr17:1946788-1947113 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 41 |
Conread position: | 1-333 |
Cow position: | chr17:14217214-14216882 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 178, 319 |
Conread position: | 1-334 |
Cow position: | chr17:2287196-2287530 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 306, 0 |
Conread position: | 1-343 |
Cow position: | chr17:6089351-6089008 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 0 |
Conread position: | 1-364 |
Cow position: | chr17:3643026-3642666 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 307, 327 |
Conread position: | 1-370 |
Cow position: | chr17:16418024-16417650 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 258 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 120, 125 |
Conread position: | 1-370 |
Cow position: | chr17:20087921-20087568 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 106 |
Conread position: | 1-401 |
Cow position: | chr17:2173690-2174092 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 54 |
Conread position: | 1-429 |
Cow position: | chr17:6002199-6001777 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 17 |
Conread position: | 1-509 |
Cow position: | chr17:14325686-14325186 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 43 |
Conread position: | 2-249 |
Cow position: | chr17:18849509-18849756 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 167 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-307 |
Cow position: | chr17:16859745-16859452 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 0 |
Conread position: | 2-324 |
Cow position: | chr17:2588127-2588437 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 316, 48 |
Conread position: | 2-367 |
Cow position: | chr17:22429671-22429312 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 302, 37 |
Conread position: | 2-406 |
Cow position: | chr17:1658760-1658343 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 286 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 180, 66 |
Conread position: | 2-424 |
Cow position: | chr17:42264316-42264738 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 47 |
Conread position: | 2-425 |
Cow position: | chr17:4081457-4081876 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 31 |
Conread position: | 3-222 |
Cow position: | chr17:12670635-12670423 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 151 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 3-307 |
Cow position: | chr17:40834567-40834857 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 209 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 187, 37 |
Conread position: | 3-326 |
Cow position: | chr17:15143557-15143231 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 3-326 |
Cow position: | chr17:15850212-15850533 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 268, 44 |
Conread position: | 3-326 |
Cow position: | chr17:23324641-23324318 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 306, 25 |
Conread position: | 3-333 |
Cow position: | chr17:4059915-4060243 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 306, 25 |
Conread position: | 4-98 |
Cow position: | chr17:602695-602601 (view UCSC Genome Browser custom track) |
Alignm length: | 95 |
Alignm identity: | 80 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 4-326 |
Cow position: | chr17:44853121-44852797 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 298 |
Conread position: | 4-327 |
Cow position: | chr17:27345618-27345935 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 81 |
Conread position: | 4-333 |
Cow position: | chr17:22132044-22132372 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 135 |
Conread position: | 4-333 |
Cow position: | chr17:23857223-23856890 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 4-333 |
Cow position: | chr17:35592028-35592358 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 267, 38 |
Conread position: | 4-334 |
Cow position: | chr17:18026944-18026613 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 0 |
Conread position: | 4-355 |
Cow position: | chr17:16889936-16890288 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 175, 36 |
Conread position: | 4-367 |
Cow position: | chr17:20183416-20183061 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 0 |
Conread position: | 8-370 |
Cow position: | chr17:18185716-18185359 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 233 |
Conread position: | 10-300 |
Cow position: | chr17:4286907-4287187 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 208 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 5, 64 |
Conread position: | 16-364 |
Cow position: | chr17:2579457-2579786 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 302, 43 |
Conread position: | 24-469 |
Cow position: | chr17:15370879-15371335 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 166 |
Conread position: | 25-367 |
Cow position: | chr17:152651-152292 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 220 |
Conread position: | 30-424 |
Cow position: | chr17:4295190-4295581 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 80 |
Conread position: | 30-425 |
Cow position: | chr17:20401513-20401898 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 138 |
Conread position: | 34-307 |
Cow position: | chr17:20812480-20812213 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 183 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 144, 15 |
Conread position: | 34-325 |
Cow position: | chr17:38872918-38873204 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 208 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 36, 101 |
Conread position: | 42-364 |
Cow position: | chr17:31199792-31199485 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 243 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 17, 106 |
Conread position: | 44-335 |
Cow position: | chr17:18325138-18324853 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 208 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 130, 38 |
Conread position: | 52-234 |
Cow position: | chr17:14308451-14308270 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 130 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 23, 95 |
Conread position: | 65-364 |
Cow position: | chr17:40804690-40804988 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 264 |
Conread position: | 82-299 |
Cow position: | chr17:249827-250047 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 52 |
Conread position: | 86-326 |
Cow position: | chr17:181258-181499 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 0 |
Conread position: | 87-411 |
Cow position: | chr17:2147072-2147385 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 240 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 49, 15 |
Conread position: | 92-333 |
Cow position: | chr17:602523-602294 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 87 |
Conread position: | 110-287 |
Cow position: | chr17:26205888-26205711 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 151 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 111-364 |
Cow position: | chr17:3709284-3709038 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 178 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 205, 35 |
Conread position: | 125-314 |
Cow position: | chr17:6068568-6068753 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 139 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 152, 36 |
Conread position: | 133-370 |
Cow position: | chr17:1283763-1283529 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 176, 204 |
Conread position: | 154-355 |
Cow position: | chr17:22557583-22557785 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 156 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 13, 85 |
Conread position: | 157-326 |
Cow position: | chr17:43952596-43952427 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 140 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 152, 22 |
Conread position: | 160-314 |
Cow position: | chr17:15323215-15323368 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 123 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 161-324 |
Cow position: | chr17:31768069-31767905 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 137 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 148, 0 |
Conread position: | 172-326 |
Cow position: | chr17:34156109-34156264 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 130 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 137, 0 |
Conread position: | 182-536 |
Cow position: | chr17:36987680-36987348 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 318, 124 |
Conread position: | 192-350 |
Cow position: | chr17:14041044-14040886 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 116 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 116, 58 |
Conread position: | 203-307 |
Cow position: | chr17:602695-602799 (view UCSC Genome Browser custom track) |
Alignm length: | 105 |
Alignm identity: | 90 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 602-744 |
Cow position: | chr17:20402103-20402241 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 114 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 606-744 |
Cow position: | chr17:152079-151943 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 109 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 49, 29 |
Show alignments to all cow chromosomes.