Cow genome map
Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
Conread position: | 1-141 |
Cow position: | chr18:44621777-44621917 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 115 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-159 |
Cow position: | chr18:35288549-35288714 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 125 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 1-177 |
Cow position: | chr18:8312280-8312455 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 133 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 21, 26 |
Conread position: | 1-198 |
Cow position: | chr18:29070269-29070459 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 137 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 1-234 |
Cow position: | chr18:43201075-43201305 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 49 |
Conread position: | 1-252 |
Cow position: | chr18:25350682-25350934 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 1-265 |
Cow position: | chr18:54024341-54024078 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 100 |
Conread position: | 1-278 |
Cow position: | chr18:36484263-36484543 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 188 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 62, 25 |
Conread position: | 1-305 |
Cow position: | chr18:114413-114711 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 1-307 |
Cow position: | chr18:19352403-19352709 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-307 |
Cow position: | chr18:41840807-41840501 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-314 |
Cow position: | chr18:14415994-14416306 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 262, 0 |
Conread position: | 1-314 |
Cow position: | chr18:37505081-37505394 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 174, 261 |
Conread position: | 1-315 |
Cow position: | chr18:14130407-14130716 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 1-326 |
Cow position: | chr18:16176595-16176274 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 16 |
Conread position: | 1-326 |
Cow position: | chr18:22602505-22602831 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 0 |
Conread position: | 1-326 |
Cow position: | chr18:24040715-24040388 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 299, 0 |
Conread position: | 1-326 |
Cow position: | chr18:27838297-27837973 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 282, 109 |
Conread position: | 1-326 |
Cow position: | chr18:28973885-28973559 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 0 |
Conread position: | 1-326 |
Cow position: | chr18:33953550-33953231 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 49 |
Conread position: | 1-326 |
Cow position: | chr18:36508351-36508676 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 100 |
Conread position: | 1-326 |
Cow position: | chr18:47742036-47742362 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 0 |
Conread position: | 1-326 |
Cow position: | chr18:51463057-51462735 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 109 |
Conread position: | 1-332 |
Cow position: | chr18:15855044-15855369 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 215 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 97, 79 |
Conread position: | 1-333 |
Cow position: | chr18:16864091-16864406 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 225 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 131, 37 |
Conread position: | 1-333 |
Cow position: | chr18:48221895-48222230 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 246 |
Conread position: | 1-333 |
Cow position: | chr18:51341704-51342038 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 0 |
Conread position: | 1-333 |
Cow position: | chr18:53785855-53786189 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 27 |
Conread position: | 1-334 |
Cow position: | chr18:2019668-2019335 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 178, 306 |
Conread position: | 1-335 |
Cow position: | chr18:9186749-9186422 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 228 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 73, 85 |
Conread position: | 1-343 |
Cow position: | chr18:51689644-51689985 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 51 |
Conread position: | 1-349 |
Cow position: | chr18:33358885-33359231 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 141 |
Conread position: | 1-364 |
Cow position: | chr18:40478405-40478761 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 37 |
Conread position: | 1-370 |
Cow position: | chr18:32293786-32294142 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 125 |
Conread position: | 1-392 |
Cow position: | chr18:43146908-43146517 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 336 |
Conread position: | 1-413 |
Cow position: | chr18:5980457-5980853 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 274 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 11, 6 |
Conread position: | 1-413 |
Cow position: | chr18:37599511-37599107 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 317, 46 |
Conread position: | 1-516 |
Cow position: | chr18:54171827-54171323 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 49 |
Conread position: | 2-257 |
Cow position: | chr18:20832862-20833111 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 166 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-326 |
Cow position: | chr18:55088906-55088581 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 307, 0 |
Conread position: | 2-335 |
Cow position: | chr18:35801698-35801366 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 215 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 10, 18 |
Conread position: | 2-349 |
Cow position: | chr18:33335887-33336228 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 307, 11 |
Conread position: | 2-365 |
Cow position: | chr18:23797666-23798027 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 307, 326 |
Conread position: | 2-433 |
Cow position: | chr18:2887002-2886564 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 307, 201 |
Conread position: | 3-314 |
Cow position: | chr18:51480858-51481170 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 3-314 |
Cow position: | chr18:52650951-52651250 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 3-326 |
Cow position: | chr18:11275086-11274762 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 306, 0 |
Conread position: | 4-147 |
Cow position: | chr18:17992542-17992401 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 109 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 4-208 |
Cow position: | chr18:16659984-16659793 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 158 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 138, 0 |
Conread position: | 4-326 |
Cow position: | chr18:16534000-16534322 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 24 |
Conread position: | 4-327 |
Cow position: | chr18:51257998-51258328 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 0 |
Conread position: | 4-327 |
Cow position: | chr18:51310601-51310928 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 46 |
Conread position: | 4-333 |
Cow position: | chr18:40695773-40695439 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 219 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 13, 26 |
Conread position: | 4-333 |
Cow position: | chr18:47719563-47719232 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 72 |
Conread position: | 4-333 |
Cow position: | chr18:54044682-54044371 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 307, 74 |
Conread position: | 4-334 |
Cow position: | chr18:39748597-39748929 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 291 |
Conread position: | 4-370 |
Cow position: | chr18:6869236-6868875 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 38 |
Conread position: | 4-509 |
Cow position: | chr18:29236833-29237346 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 46 |
Conread position: | 5-327 |
Cow position: | chr18:23944353-23944030 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 304, 0 |
Conread position: | 5-333 |
Cow position: | chr18:1521151-1521497 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 23 |
Conread position: | 6-334 |
Cow position: | chr18:35335502-35335831 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 303, 0 |
Conread position: | 6-370 |
Cow position: | chr18:19539557-19539201 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 311, 268 |
Conread position: | 8-293 |
Cow position: | chr18:16393618-16393337 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 198 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 242, 15 |
Conread position: | 14-259 |
Cow position: | chr18:32652251-32652495 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 14-334 |
Cow position: | chr18:33268860-33269178 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 288, 66 |
Conread position: | 20-413 |
Cow position: | chr18:54269622-54270013 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 286 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 55, 29 |
Conread position: | 24-413 |
Cow position: | chr18:16843295-16842904 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 98 |
Conread position: | 26-350 |
Cow position: | chr18:36211070-36210746 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 22 |
Conread position: | 28-401 |
Cow position: | chr18:29048526-29048137 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 262 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 21, 81 |
Conread position: | 28-405 |
Cow position: | chr18:16877523-16877890 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 9 |
Conread position: | 34-363 |
Cow position: | chr18:46877953-46877623 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 277, 39 |
Conread position: | 35-401 |
Cow position: | chr18:36258311-36257932 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 266 |
Conread position: | 40-186 |
Cow position: | chr18:51629422-51629567 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 112 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 122, 104 |
Conread position: | 44-306 |
Cow position: | chr18:44601588-44601842 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 189 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 176, 27 |
Conread position: | 44-307 |
Cow position: | chr18:16078778-16079041 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 60-288 |
Cow position: | chr18:18089396-18089171 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 181 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 0 |
Conread position: | 72-333 |
Cow position: | chr18:19407287-19407021 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 179 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 61, 66 |
Conread position: | 82-307 |
Cow position: | chr18:16722641-16722419 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 156 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 40, 92 |
Conread position: | 84-385 |
Cow position: | chr18:54003618-54003919 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 26 |
Conread position: | 108-364 |
Cow position: | chr18:27987185-27987442 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 175, 237 |
Conread position: | 131-333 |
Cow position: | chr18:17992273-17992069 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 171 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 178, 0 |
Conread position: | 135-306 |
Cow position: | chr18:45958870-45959039 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 139 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 152-413 |
Cow position: | chr18:29763539-29763800 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 197 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 157, 92 |
Conread position: | 174-509 |
Cow position: | chr18:56462713-56462372 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 193-370 |
Cow position: | chr18:24700905-24700730 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 142 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 38, 146 |
Conread position: | 205-364 |
Cow position: | chr18:51629663-51629822 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 121 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 104, 67 |
Conread position: | 605-735 |
Cow position: | chr18:51275700-51275572 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 107 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.