Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-141
Cow position: chr18:44621777-44621917 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-159
Cow position: chr18:35288549-35288714 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 1-177
Cow position: chr18:8312280-8312455 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 26

Conread position: 1-198
Cow position: chr18:29070269-29070459 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 1-234
Cow position: chr18:43201075-43201305 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 49

Conread position: 1-252
Cow position: chr18:25350682-25350934 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 1-265
Cow position: chr18:54024341-54024078 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 100

Conread position: 1-278
Cow position: chr18:36484263-36484543 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 62, 25

Conread position: 1-305
Cow position: chr18:114413-114711 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 1-307
Cow position: chr18:19352403-19352709 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-307
Cow position: chr18:41840807-41840501 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr18:14415994-14416306 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 0

Conread position: 1-314
Cow position: chr18:37505081-37505394 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 261

Conread position: 1-315
Cow position: chr18:14130407-14130716 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 1-326
Cow position: chr18:16176595-16176274 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 16

Conread position: 1-326
Cow position: chr18:22602505-22602831 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-326
Cow position: chr18:24040715-24040388 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 1-326
Cow position: chr18:27838297-27837973 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 109

Conread position: 1-326
Cow position: chr18:28973885-28973559 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr18:33953550-33953231 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 49

Conread position: 1-326
Cow position: chr18:36508351-36508676 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 100

Conread position: 1-326
Cow position: chr18:47742036-47742362 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-326
Cow position: chr18:51463057-51462735 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 109

Conread position: 1-332
Cow position: chr18:15855044-15855369 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 215
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 97, 79

Conread position: 1-333
Cow position: chr18:16864091-16864406 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 131, 37

Conread position: 1-333
Cow position: chr18:48221895-48222230 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 246

Conread position: 1-333
Cow position: chr18:51341704-51342038 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-333
Cow position: chr18:53785855-53786189 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 27

Conread position: 1-334
Cow position: chr18:2019668-2019335 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 306

Conread position: 1-335
Cow position: chr18:9186749-9186422 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 85

Conread position: 1-343
Cow position: chr18:51689644-51689985 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 51

Conread position: 1-349
Cow position: chr18:33358885-33359231 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 141

Conread position: 1-364
Cow position: chr18:40478405-40478761 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 37

Conread position: 1-370
Cow position: chr18:32293786-32294142 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 125

Conread position: 1-392
Cow position: chr18:43146908-43146517 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 336

Conread position: 1-413
Cow position: chr18:5980457-5980853 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 11, 6

Conread position: 1-413
Cow position: chr18:37599511-37599107 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 46

Conread position: 1-516
Cow position: chr18:54171827-54171323 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 49

Conread position: 2-257
Cow position: chr18:20832862-20833111 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 2-326
Cow position: chr18:55088906-55088581 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 2-335
Cow position: chr18:35801698-35801366 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 215
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 18

Conread position: 2-349
Cow position: chr18:33335887-33336228 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 11

Conread position: 2-365
Cow position: chr18:23797666-23798027 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 326

Conread position: 2-433
Cow position: chr18:2887002-2886564 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 201

Conread position: 3-314
Cow position: chr18:51480858-51481170 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 3-314
Cow position: chr18:52650951-52651250 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 3-326
Cow position: chr18:11275086-11274762 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 4-147
Cow position: chr18:17992542-17992401 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 4-208
Cow position: chr18:16659984-16659793 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 138, 0

Conread position: 4-326
Cow position: chr18:16534000-16534322 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 24

Conread position: 4-327
Cow position: chr18:51257998-51258328 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 4-327
Cow position: chr18:51310601-51310928 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 46

Conread position: 4-333
Cow position: chr18:40695773-40695439 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 219
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 13, 26

Conread position: 4-333
Cow position: chr18:47719563-47719232 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 72

Conread position: 4-333
Cow position: chr18:54044682-54044371 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 74

Conread position: 4-334
Cow position: chr18:39748597-39748929 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 291

Conread position: 4-370
Cow position: chr18:6869236-6868875 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 38

Conread position: 4-509
Cow position: chr18:29236833-29237346 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 46

Conread position: 5-327
Cow position: chr18:23944353-23944030 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 0

Conread position: 5-333
Cow position: chr18:1521151-1521497 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 23

Conread position: 6-334
Cow position: chr18:35335502-35335831 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 6-370
Cow position: chr18:19539557-19539201 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 268

Conread position: 8-293
Cow position: chr18:16393618-16393337 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 242, 15

Conread position: 14-259
Cow position: chr18:32652251-32652495 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 14-334
Cow position: chr18:33268860-33269178 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 66

Conread position: 20-413
Cow position: chr18:54269622-54270013 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 286
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 55, 29

Conread position: 24-413
Cow position: chr18:16843295-16842904 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 98

Conread position: 26-350
Cow position: chr18:36211070-36210746 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 22

Conread position: 28-401
Cow position: chr18:29048526-29048137 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 81

Conread position: 28-405
Cow position: chr18:16877523-16877890 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 9

Conread position: 34-363
Cow position: chr18:46877953-46877623 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 39

Conread position: 35-401
Cow position: chr18:36258311-36257932 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 266

Conread position: 40-186
Cow position: chr18:51629422-51629567 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 122, 104

Conread position: 44-306
Cow position: chr18:44601588-44601842 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 176, 27

Conread position: 44-307
Cow position: chr18:16078778-16079041 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 60-288
Cow position: chr18:18089396-18089171 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 72-333
Cow position: chr18:19407287-19407021 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 61, 66

Conread position: 82-307
Cow position: chr18:16722641-16722419 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 92

Conread position: 84-385
Cow position: chr18:54003618-54003919 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 26

Conread position: 108-364
Cow position: chr18:27987185-27987442 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 237

Conread position: 131-333
Cow position: chr18:17992273-17992069 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 135-306
Cow position: chr18:45958870-45959039 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 152-413
Cow position: chr18:29763539-29763800 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 157, 92

Conread position: 174-509
Cow position: chr18:56462713-56462372 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 193-370
Cow position: chr18:24700905-24700730 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 146

Conread position: 205-364
Cow position: chr18:51629663-51629822 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 104, 67

Conread position: 605-735
Cow position: chr18:51275700-51275572 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.