Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-108 |
| Cow position: | chr19:4532727-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-216 |
| Cow position: | chr19:30372304-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-271 |
| Cow position: | chr19:4385503-4385773 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 134 |
| Conread position: | 1-277 |
| Cow position: | chr19:40071128-40070846 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 250 |
| Conread position: | 1-291 |
| Cow position: | chr19:40887630-40887345 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 203 |
| Conread position: | 1-297 |
| Cow position: | chr19:32244706-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr19:172233-172546 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr19:893591-893280 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1-314 |
| Cow position: | chr19:7488335-7488648 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr19:28581634-28581324 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-326 |
| Cow position: | chr19:37918-38243 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 145 |
| Conread position: | 1-326 |
| Cow position: | chr19:687087-687411 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 222 |
| Conread position: | 1-326 |
| Cow position: | chr19:772621-772947 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 0 |
| Conread position: | 1-326 |
| Cow position: | chr19:7342090-7342416 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr19:32212048-32211725 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 85 |
| Conread position: | 1-326 |
| Cow position: | chr19:33873449-33873774 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 49 |
| Conread position: | 1-326 |
| Cow position: | chr19:33941634-33941958 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 133 |
| Conread position: | 1-326 |
| Cow position: | chr19:39390539-39390856 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 27 |
| Conread position: | 1-326 |
| Cow position: | chr19:43143738-43144064 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr19:52151809-52151482 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1-327 |
| Cow position: | chr19:203983-204310 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-333 |
| Cow position: | chr19:10517085-10516748 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 1-333 |
| Cow position: | chr19:10672284-10671951 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-333 |
| Cow position: | chr19:28593299-28593619 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 168 |
| Conread position: | 1-355 |
| Cow position: | chr19:20104735-20105092 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 24 |
| Conread position: | 1-413 |
| Cow position: | chr19:15953876-15954274 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 1-599 |
| Cow position: | chr19:32223417-32222820 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 49 |
| Conread position: | 2-111 |
| Cow position: | chr19:32193600-32193711 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-141 |
| Cow position: | chr19:29209584-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-200 |
| Cow position: | chr19:55078769-55078967 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-201 |
| Cow position: | chr19:34443-34638 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 2-255 |
| Cow position: | chr19:35979287-35979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 144 |
| Conread position: | 2-266 |
| Cow position: | chr19:42299476-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 2-306 |
| Cow position: | chr19:439620-439330 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 2-326 |
| Cow position: | chr19:170719-170399 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 53 |
| Conread position: | 3-507 |
| Cow position: | chr19:377872-377377 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 33 |
| Conread position: | 4-125 |
| Cow position: | chr19:27052744-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-207 |
| Cow position: | chr19:543601-543398 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-208 |
| Cow position: | chr19:20125644-20125837 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 175, 38 |
| Conread position: | 4-226 |
| Cow position: | chr19:32237657-32237440 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 4-233 |
| Cow position: | chr19:31341731-31341976 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 4-239 |
| Cow position: | chr19:32785586-32785355 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 4-299 |
| Cow position: | chr19:39688554-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 4-320 |
| Cow position: | chr19:32665555-32665867 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 196 |
| Conread position: | 6-370 |
| Cow position: | chr19:39546655-39546998 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 71 |
| Conread position: | 6-384 |
| Cow position: | chr19:6553638-6554006 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 34 |
| Conread position: | 7-224 |
| Cow position: | chr19:7405446-7405231 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 8-413 |
| Cow position: | chr19:30755205-30755610 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 143 |
| Conread position: | 9-352 |
| Cow position: | chr19:416692-417034 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 46 |
| Conread position: | 10-294 |
| Cow position: | chr19:350252-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 14-335 |
| Cow position: | chr19:32202782-32203096 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 15-199 |
| Cow position: | chr19:27038119-27037940 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 140, 32 |
| Conread position: | 15-314 |
| Cow position: | chr19:2274338-2274043 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 17-385 |
| Cow position: | chr19:15042199-15042562 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 189, 80 |
| Conread position: | 18-257 |
| Cow position: | chr19:261483-261721 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 18-314 |
| Cow position: | chr19:40852400-40852103 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 20-364 |
| Cow position: | chr19:1032118-1032464 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 56 |
| Conread position: | 28-271 |
| Cow position: | chr19:7068518-7068746 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 34-307 |
| Cow position: | chr19:30428041-30428312 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 38-335 |
| Cow position: | chr19:76207-75911 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 29 |
| Conread position: | 39-435 |
| Cow position: | chr19:42248866-42249265 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 133 |
| Conread position: | 39-696 |
| Cow position: | chr19:352933-352261 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 330 |
| Conread position: | 42-415 |
| Cow position: | chr19:7449960-7449602 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 42-449 |
| Cow position: | chr19:35376850-35377254 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 184 |
| Conread position: | 58-333 |
| Cow position: | chr19:680537-680263 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 162, 43 |
| Conread position: | 68-335 |
| Cow position: | chr19:17018554-17018809 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 81-425 |
| Cow position: | chr19:42649010-42648664 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 195 |
| Conread position: | 136-334 |
| Cow position: | chr19:28376641-28376842 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 137-370 |
| Cow position: | chr19:40817545-40817310 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 139-378 |
| Cow position: | chr19:4532624-4532386 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 142-333 |
| Cow position: | chr19:29209762-29209953 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 47 |
| Conread position: | 151-314 |
| Cow position: | chr19:5729000-5729164 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 154-303 |
| Cow position: | chr19:439286-439137 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-507 |
| Cow position: | chr19:42877-43220 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 176-364 |
| Cow position: | chr19:341418-341602 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 133, 161 |
| Conread position: | 194-509 |
| Cow position: | chr19:163215-162886 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 168 |
| Conread position: | 204-543 |
| Cow position: | chr19:27052623-27052284 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 94 |
| Conread position: | 218-343 |
| Cow position: | chr19:5208411-5208537 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 277-509 |
| Cow position: | chr19:137058-136819 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 330-509 |
| Cow position: | chr19:44532469-44532655 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 570-732 |
| Cow position: | chr19:27052307-27052149 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 583-736 |
| Cow position: | chr19:32222810-32222657 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 128, 104 |
| Conread position: | 599-731 |
| Cow position: | chr19:136797-136666 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 80 |
| Conread position: | 605-720 |
| Cow position: | chr19:39669275-39669162 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.