Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-119 |
| Cow position: | chr20:4799672-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr20:21393542-21393706 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 139 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-214 |
| Cow position: | chr20:11679131-11678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-306 |
| Cow position: | chr20:13665222-13664932 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 178, 25 |
| Conread position: | 1-306 |
| Cow position: | chr20:15097899-15097593 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 1-307 |
| Cow position: | chr20:29948478-29948784 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-313 |
| Cow position: | chr20:35119552-35119861 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 1-314 |
| Cow position: | chr20:15291993-15292302 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-314 |
| Cow position: | chr20:23469680-23469374 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 1-320 |
| Cow position: | chr20:30684314-30684619 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 202 |
| Conread position: | 1-326 |
| Cow position: | chr20:822746-823072 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr20:5534918-5535242 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 6 |
| Conread position: | 1-326 |
| Cow position: | chr20:8004246-8003921 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 154 |
| Conread position: | 1-326 |
| Cow position: | chr20:23798861-23799190 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 292 |
| Conread position: | 1-326 |
| Cow position: | chr20:25851011-25850686 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 22 |
| Conread position: | 1-326 |
| Cow position: | chr20:27869176-27869502 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 0 |
| Conread position: | 1-333 |
| Cow position: | chr20:7116490-7116157 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-333 |
| Cow position: | chr20:15947414-15947067 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 235 |
| Conread position: | 1-334 |
| Cow position: | chr20:3684506-3684175 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 139 |
| Conread position: | 1-343 |
| Cow position: | chr20:5560736-5560393 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 1-364 |
| Cow position: | chr20:12438782-12438421 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 327 |
| Conread position: | 1-364 |
| Cow position: | chr20:21914305-21914667 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 274 |
| Conread position: | 1-387 |
| Cow position: | chr20:9954006-9953617 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 174 |
| Conread position: | 1-405 |
| Cow position: | chr20:28565617-28565213 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 327 |
| Conread position: | 1-411 |
| Cow position: | chr20:31378905-31378492 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 84 |
| Conread position: | 2-197 |
| Cow position: | chr20:24517014-24517206 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-307 |
| Cow position: | chr20:28160760-28161055 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-326 |
| Cow position: | chr20:25961083-25961408 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 2-327 |
| Cow position: | chr20:3270684-3271010 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 247 |
| Conread position: | 2-364 |
| Cow position: | chr20:13762882-13763244 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 328 |
| Conread position: | 2-405 |
| Cow position: | chr20:20905220-20904823 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 3-307 |
| Cow position: | chr20:8835652-8835353 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 244, 25 |
| Conread position: | 3-326 |
| Cow position: | chr20:19437930-19438245 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 173 |
| Conread position: | 3-337 |
| Cow position: | chr20:3033042-3033377 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 0 |
| Conread position: | 4-327 |
| Cow position: | chr20:24614519-24614841 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 69 |
| Conread position: | 4-333 |
| Cow position: | chr20:3252153-3251822 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 231 |
| Conread position: | 4-333 |
| Cow position: | chr20:5484172-5484503 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 24 |
| Conread position: | 4-334 |
| Cow position: | chr20:15064751-15065078 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 30 |
| Conread position: | 4-504 |
| Cow position: | chr20:18315602-18315127 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 94 |
| Conread position: | 6-333 |
| Cow position: | chr20:13680072-13679745 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 22 |
| Conread position: | 6-352 |
| Cow position: | chr20:8313452-8313111 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 57 |
| Conread position: | 9-349 |
| Cow position: | chr20:28476287-28476618 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 11-413 |
| Cow position: | chr20:13434963-13434564 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 14-294 |
| Cow position: | chr20:5233158-5232888 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 29-411 |
| Cow position: | chr20:13767396-13767770 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 31-335 |
| Cow position: | chr20:37579446-37579739 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 34-330 |
| Cow position: | chr20:28463486-28463784 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 124 |
| Conread position: | 40-283 |
| Cow position: | chr20:10841229-10840986 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 21, 162 |
| Conread position: | 48-335 |
| Cow position: | chr20:8993618-8993336 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 69-291 |
| Cow position: | chr20:20755402-20755180 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 87-413 |
| Cow position: | chr20:10856967-10856637 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 220, 57 |
| Conread position: | 88-277 |
| Cow position: | chr20:19367523-19367334 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 126 |
| Conread position: | 92-335 |
| Cow position: | chr20:35104562-35104316 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 128-370 |
| Cow position: | chr20:10846011-10845778 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 12 |
| Conread position: | 149-370 |
| Cow position: | chr20:21393721-21393938 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 209-326 |
| Cow position: | chr20:19495170-19495288 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.