Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-144
Cow position: chr21:3615390-3615534 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 123
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 128, 0

Conread position: 1-168
Cow position: chr21:33251490-33251657 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 139
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-184
Cow position: chr21:18692820-18692997 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-186
Cow position: chr21:28495094-28495278 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 121, 73

Conread position: 1-247
Cow position: chr21:34054643-34054391 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 150, 76

Conread position: 1-259
Cow position: chr21:4222589-4222337 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 1-275
Cow position: chr21:13281996-13282265 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 185, 33

Conread position: 1-286
Cow position: chr21:21947704-21947425 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 102, 41

Conread position: 1-300
Cow position: chr21:47948207-47948505 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 0

Conread position: 1-307
Cow position: chr21:216404-216693 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 23, 42

Conread position: 1-307
Cow position: chr21:2510749-2511055 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-307
Cow position: chr21:10566771-10567072 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 1-307
Cow position: chr21:40271579-40271273 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr21:10850178-10850490 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 0

Conread position: 1-314
Cow position: chr21:30599822-30599515 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 1-314
Cow position: chr21:31559555-31559245 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-320
Cow position: chr21:2883650-2883331 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position: chr21:3778864-3779184 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-325
Cow position: chr21:4589894-4589568 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-325
Cow position: chr21:12055902-12055578 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 9

Conread position: 1-325
Cow position: chr21:37045011-37045333 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 72

Conread position: 1-326
Cow position: chr21:2476429-2476117 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 239

Conread position: 1-326
Cow position: chr21:4090747-4091073 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr21:6339664-6339990 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-326
Cow position: chr21:7267445-7267113 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 27

Conread position: 1-326
Cow position: chr21:11453558-11453232 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-326
Cow position: chr21:11505685-11506020 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 1-326
Cow position: chr21:26638367-26638041 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr21:39425161-39425487 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 69

Conread position: 1-326
Cow position: chr21:46915686-46916012 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-333
Cow position: chr21:30165380-30165055 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 25

Conread position: 1-364
Cow position: chr21:8678262-8677899 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-364
Cow position: chr21:27282485-27282845 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 167

Conread position: 1-370
Cow position: chr21:2416333-2416687 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 23

Conread position: 1-400
Cow position: chr21:6699468-6699093 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 266
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 195, 43

Conread position: 2-139
Cow position: chr21:26818922-26818785 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-199
Cow position: chr21:2769362-2769165 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 2-333
Cow position: chr21:13123905-13123574 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 58

Conread position: 2-334
Cow position: chr21:36714731-36715060 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 47

Conread position: 2-509
Cow position: chr21:4183623-4184118 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 143

Conread position: 3-176
Cow position: chr21:34259120-34258957 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 3-238
Cow position: chr21:33755404-33755636 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 133, 0

Conread position: 3-314
Cow position: chr21:48116209-48116512 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 3-326
Cow position: chr21:30561902-30562226 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 3-334
Cow position: chr21:3798271-3797939 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 3-364
Cow position: chr21:146023-146381 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 225

Conread position: 3-370
Cow position: chr21:2674529-2674149 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 60

Conread position: 3-413
Cow position: chr21:21914385-21914803 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 138

Conread position: 3-509
Cow position: chr21:2541313-2540795 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 60

Conread position: 4-160
Cow position: chr21:2716582-2716425 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 133
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 125, 0

Conread position: 4-281
Cow position: chr21:47939577-47939849 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 4-286
Cow position: chr21:3426586-3426868 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-327
Cow position: chr21:34293118-34293440 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 46

Conread position: 4-333
Cow position: chr21:2530026-2529696 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 73

Conread position: 4-334
Cow position: chr21:4456928-4457258 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 24

Conread position: 4-370
Cow position: chr21:1292079-1291727 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 68

Conread position: 4-370
Cow position: chr21:2788890-2788529 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 38

Conread position: 4-507
Cow position: chr21:9891695-9892222 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 58

Conread position: 4-509
Cow position: chr21:23811977-23812491 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 97

Conread position: 4-510
Cow position: chr21:359117-359650 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 126

Conread position: 6-349
Cow position: chr21:18820313-18819984 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 22

Conread position: 6-367
Cow position: chr21:35596471-35596830 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 239

Conread position: 7-290
Cow position: chr21:21926608-21926324 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 12, 72

Conread position: 8-364
Cow position: chr21:4076944-4077295 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 237

Conread position: 8-416
Cow position: chr21:26823129-26822716 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 15-402
Cow position: chr21:445208-445584 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 261
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 32, 22

Conread position: 17-430
Cow position: chr21:19650918-19651336 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 273
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 9

Conread position: 19-267
Cow position: chr21:32517005-32517259 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 160, 0

Conread position: 28-278
Cow position: chr21:36824821-36825069 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 41

Conread position: 28-370
Cow position: chr21:2502019-2502353 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 36

Conread position: 30-314
Cow position: chr21:1191291-1191574 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 32-272
Cow position: chr21:4982416-4982658 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 74

Conread position: 34-300
Cow position: chr21:992895-992633 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 39, 0

Conread position: 34-371
Cow position: chr21:3194516-3194853 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 40, 52

Conread position: 36-234
Cow position: chr21:37147637-37147840 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 31, 92

Conread position: 40-325
Cow position: chr21:20744628-20744346 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 234

Conread position: 40-335
Cow position: chr21:4086939-4087235 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 15

Conread position: 48-376
Cow position: chr21:23860936-23861258 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 139, 50

Conread position: 68-328
Cow position: chr21:10762560-10762811 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 54

Conread position: 80-343
Cow position: chr21:26650218-26650482 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 0

Conread position: 90-509
Cow position: chr21:30226206-30226625 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 280

Conread position: 103-326
Cow position: chr21:35143968-35144180 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 214, 111

Conread position: 107-335
Cow position: chr21:23601398-23601620 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 186, 129

Conread position: 113-327
Cow position: chr21:3615531-3615736 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 39

Conread position: 165-327
Cow position: chr21:34258728-34258564 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 73, 0

Conread position: 165-364
Cow position: chr21:33251768-33251965 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 62, 70

Conread position: 179-509
Cow position: chr21:9870022-9870352 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 158

Conread position: 196-333
Cow position: chr21:2716425-2716286 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 120
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 112, 0

Conread position: 239-503
Cow position: chr21:29105-29378 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 427-744
Cow position: chr21:36715570-36715889 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 21

Conread position: 599-744
Cow position: chr21:9870374-9870514 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 126, 56

Conread position: 630-744
Cow position: chr21:9892281-9892398 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 48

Show alignments to all cow chromosomes.